Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o08
         (751 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051980-1|AAK93404.1|  416|Drosophila melanogaster LD44970p pro...   200   2e-51
AJ252069-1|CAB64384.1|  416|Drosophila melanogaster putative suc...   200   2e-51
AE014296-966|AAF50771.1|  416|Drosophila melanogaster CG10622-PA...   200   2e-51
AY058331-1|AAL13560.1|  503|Drosophila melanogaster GH10480p pro...   125   7e-29
AE014297-840|AAF54308.2|  502|Drosophila melanogaster CG11963-PA...   125   7e-29
AE014296-967|AAN12099.1|  112|Drosophila melanogaster CG10622-PB...   102   6e-22

>AY051980-1|AAK93404.1|  416|Drosophila melanogaster LD44970p
           protein.
          Length = 416

 Score =  200 bits (487), Expect = 2e-51
 Identities = 95/162 (58%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
 Frame = +3

Query: 267 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 443
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 444 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 623
             EYVVKAQILAGGRGKG FDNGFKGGVH+T N+ +++ L + MIGN+LITKQTPK GIL
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGIL 121

Query: 624 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIE 749
           VNKVMVA S+NI RETY  I+++R  NG  ++ASPAGGMDIE
Sbjct: 122 VNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIE 163


>AJ252069-1|CAB64384.1|  416|Drosophila melanogaster putative
           succinyl-coa ligase (GDP-forming) beta-chain precursor
           protein.
          Length = 416

 Score =  200 bits (487), Expect = 2e-51
 Identities = 95/162 (58%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
 Frame = +3

Query: 267 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 443
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 444 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 623
             EYVVKAQILAGGRGKG FDNGFKGGVH+T N+ +++ L + MIGN+LITKQTPK GIL
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGIL 121

Query: 624 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIE 749
           VNKVMVA S+NI RETY  I+++R  NG  ++ASPAGGMDIE
Sbjct: 122 VNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIE 163


>AE014296-966|AAF50771.1|  416|Drosophila melanogaster CG10622-PA,
           isoform A protein.
          Length = 416

 Score =  200 bits (487), Expect = 2e-51
 Identities = 95/162 (58%), Positives = 122/162 (75%), Gaps = 1/162 (0%)
 Frame = +3

Query: 267 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 443
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 444 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGIL 623
             EYVVKAQILAGGRGKG FDNGFKGGVH+T N+ +++ L + MIGN+LITKQTPK GIL
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGIL 121

Query: 624 VNKVMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIE 749
           VNKVMVA S+NI RETY  I+++R  NG  ++ASPAGGMDIE
Sbjct: 122 VNKVMVARSINITRETYLCILLDREHNGPVLIASPAGGMDIE 163


>AY058331-1|AAL13560.1|  503|Drosophila melanogaster GH10480p
           protein.
          Length = 503

 Score =  125 bits (301), Expect = 7e-29
 Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = +3

Query: 324 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSG-FKADEYVVKAQILAGGRGKGH 500
           R+LN+QEH S  LL + ++    F +  +  + N ++   K D  V+KAQ+LAGGRGKG 
Sbjct: 36  RNLNVQEHVSYSLLNEAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGT 95

Query: 501 FDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETYFS 680
           F NG KGGV +  +     +L+  MI   L+TKQT   G +  KVMVAE    +RE YF+
Sbjct: 96  FKNGLKGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRREFYFA 155

Query: 681 IVMERSFNGAAIVASPAGGMDIE 749
           ++MER+FNG  ++AS  GG+DIE
Sbjct: 156 VMMERAFNGPVLIASKEGGVDIE 178


>AE014297-840|AAF54308.2|  502|Drosophila melanogaster CG11963-PA
           protein.
          Length = 502

 Score =  125 bits (301), Expect = 7e-29
 Identities = 64/143 (44%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
 Frame = +3

Query: 324 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNALSG-FKADEYVVKAQILAGGRGKGH 500
           R+LN+QEH S  LL + ++    F +  +  + N ++   K D  V+KAQ+LAGGRGKG 
Sbjct: 36  RNLNVQEHVSYSLLNEAKIPTPRFAVAKNGKEANDIATKLKTDNLVLKAQVLAGGRGKGT 95

Query: 501 FDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETYFS 680
           F NG KGGV +  +     +L+  MI   L+TKQT   G +  KVMVAE    +RE YF+
Sbjct: 96  FKNGLKGGVRVVYDPQTAEELSSKMIDQLLVTKQTGAAGRICKKVMVAERKFPRREFYFA 155

Query: 681 IVMERSFNGAAIVASPAGGMDIE 749
           ++MER+FNG  ++AS  GG+DIE
Sbjct: 156 VMMERAFNGPVLIASKEGGVDIE 178


>AE014296-967|AAN12099.1|  112|Drosophila melanogaster CG10622-PB,
           isoform B protein.
          Length = 112

 Score =  102 bits (244), Expect = 6e-22
 Identities = 50/91 (54%), Positives = 65/91 (71%), Gaps = 1/91 (1%)
 Frame = +3

Query: 267 SFKLINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRIID-SKLDTNALSGFK 443
           SF L  + ++ +    +  R+LNL E  SKDLL+KY V+IQ F++++ SK D   +  F+
Sbjct: 2   SFLLKAVTTARHIVHKVPVRNLNLLEFQSKDLLQKYGVAIQQFKVLNNSKADAEVVKTFE 61

Query: 444 ADEYVVKAQILAGGRGKGHFDNGFKGGVHLT 536
             EYVVKAQILAGGRGKG FDNGFKGGVH+T
Sbjct: 62  CPEYVVKAQILAGGRGKGTFDNGFKGGVHIT 92


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,591,662
Number of Sequences: 53049
Number of extensions: 535086
Number of successful extensions: 1094
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)