Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3o08
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical pr...   153   1e-37
Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical pr...   118   3e-27
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>U41557-3|AAA83304.1|  415|Caenorhabditis elegans Hypothetical
           protein C50F7.4 protein.
          Length = 415

 Score =  153 bits (372), Expect = 1e-37
 Identities = 77/145 (53%), Positives = 101/145 (69%), Gaps = 3/145 (2%)
 Frame = +3

Query: 324 RHLNLQEHHSKDLLRKYQVSIQDFRIIDSKLDTNAL-SGFKADEYVVKAQILAGGRGKGH 500
           R LNLQE  SK++L K+  S+Q+F +  ++ +       F   EYVVKAQILAGGRGKG 
Sbjct: 18  RFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVVKAQILAGGRGKGK 77

Query: 501 FDNGFKG--GVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNKVMVAESVNIKRETY 674
           F NG KG  GV +TK +D  ++    MIG +L+TKQT  EG+ V+KVM+AE V+IKRETY
Sbjct: 78  FINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKVMIAEGVDIKRETY 137

Query: 675 FSIVMERSFNGAAIVASPAGGMDIE 749
            +++M+R  NG  +VASP GGMDIE
Sbjct: 138 LAVLMDRESNGPVVVASPDGGMDIE 162


>Z68004-1|CAA91981.1|  435|Caenorhabditis elegans Hypothetical
           protein F47B10.1 protein.
          Length = 435

 Score =  118 bits (285), Expect = 3e-27
 Identities = 62/159 (38%), Positives = 92/159 (57%), Gaps = 1/159 (0%)
 Frame = +3

Query: 276 LINLASSTYCPRVISTRHLNLQEHHSKDLLRKYQVSIQDFRII-DSKLDTNALSGFKADE 452
           L+N +     P   + R L L EHH   +L+ Y++ +  F +  D++   +        +
Sbjct: 9   LLNTSQKFMAP---AARTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKD 65

Query: 453 YVVKAQILAGGRGKGHFDNGFKGGVHLTKNRDKIVDLAKNMIGNKLITKQTPKEGILVNK 632
           YVVKAQ+LAGGRGKG F +G +GGV +    D++   A  MIG  LITKQT   G    +
Sbjct: 66  YVVKAQVLAGGRGKGRFSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEE 125

Query: 633 VMVAESVNIKRETYFSIVMERSFNGAAIVASPAGGMDIE 749
           VMV + +  +RE YFSI ++R+ NG  ++AS  GG++IE
Sbjct: 126 VMVCKRLFTRREYYFSITLDRNTNGPIVIASSQGGVNIE 164


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 685 TILKYVSLLIFTLSATITLFTKIPSLGVCLVISLFPIIF 569
           ++L YV L    L ++ TLF  IPS+ V L +S+  + F
Sbjct: 123 SVLLYVFLREKDLKSSWTLFYYIPSIAVSLFVSVLNVNF 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,020
Number of Sequences: 27780
Number of extensions: 291714
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)