Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3o02
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 113 3e-26
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 30 0.32
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 28 1.3
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 3.0
SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha... 27 4.0
SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.2
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 5.2
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 6.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 6.9
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos... 26 6.9
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 9.2
SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent me... 25 9.2
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 113 bits (272), Expect = 3e-26
Identities = 63/217 (29%), Positives = 122/217 (56%), Gaps = 15/217 (6%)
Frame = +1
Query: 169 LSAEGKTPEYMALAGIKFKLSLPEFKDNIQLK-EQLLNGIKAGHMAPYYKEVCND----L 333
++ + +T + ++ F+LS P ++ Q + L + I+ +AP YK + +
Sbjct: 13 MTEKARTVSDLTISQAIFELSSPFLENKSQKALDTLFSAIRDHDLAPLYKYLSENPKTSA 72
Query: 334 GWTFDQKLYDDMTKENQDRLSKFE---EDDSET-------PVWQDRLDYLCSVGDKETAT 483
FD + M K+N+++L++F+ ED E +++ DY ++ D+E
Sbjct: 73 SIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNGEHEILEAMKNKADYYTNICDRERGV 132
Query: 484 ALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDWRSRNK 663
L +E +TLT ++D +F+ R+AY + +++ +G+ + K L++KGGDW +N+
Sbjct: 133 QLCDETFERATLT-GMKIDVLFSKIRLAYVYA-DMRVVGQLLEKLKPLIEKGGDWERKNR 190
Query: 664 LKAYEAIYCLAVRDYSHAAELFIDCVSXFESYELVDF 774
LKAY+ IY +++R++S AA+L +DC+S F S EL+ +
Sbjct: 191 LKAYQGIYLMSIRNFSGAADLLLDCMSTFSSTELLPY 227
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 30.3 bits (65), Expect = 0.32
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = +1
Query: 151 NQLKMELSAEGKTPEYMALAG-IKFKLSLPEFKDNIQL---KEQLLNGIKAGHMAPYYKE 318
N LK + E E + G ++ K L +N++ K + L +A A KE
Sbjct: 115 NNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAAITKE 174
Query: 319 VCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETA 480
C + W QKLY DM +EN + K E Q LD+ E+A
Sbjct: 175 EC-EKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQ--LDHDLQASQNESA 225
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 28.3 bits (60), Expect = 1.3
Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Frame = +1
Query: 163 MELSAEGKTPEYMALAGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAPYYKEVCNDL--- 333
+ LS++ K+ A FK L F+ + +L E+L N +P Y+ +
Sbjct: 521 VSLSSQNKSAP-TAKKNNSFKPKL--FRRSRELSEKLCNNWSERVKSPSYQLKVREREKL 577
Query: 334 -GWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYED 510
W +K+ D + +S T V Q LD+ S G+K+ T + T
Sbjct: 578 PAWESRRKIMDAIQHSQVVVISGETGSGKSTQVVQFILDHYLSSGEKDLQTVVCTQP--- 634
Query: 511 STLTTNRRLDAIFALFRIAYFHGCNV-KEMGKAIN 612
RR+ AI R+A+ V KE+G +++
Sbjct: 635 ------RRISAISLAERVAFERDTTVGKEVGYSVH 663
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +2
Query: 176 RREKHLNTWHWPESNSNSVYL 238
R E +TW WP N NSV L
Sbjct: 275 RDEIGSSTWSWPSQNCNSVLL 295
>SPCC18.15 |||WD repeat protein, human WRDR85
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 592 EMGKAINKAHELVDKGGDWRSRNKLKAYEAIY 687
+ K I K HE + GGDWR + L A + Y
Sbjct: 269 DASKRIFKEHESMCYGGDWRHTDGLLATCSFY 300
>SPCC191.10 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = +1
Query: 574 HGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEAIYCLAVRDYSHAAELFIDCVSXF 750
H C V ++ K ELV K W++ +++ A C +D++ +++ F
Sbjct: 76 HSCGVNDVTDLGGKDDELVGKRKKWKTEVRIETSMA-ECNGGKDFTEMTRIYLSIRKNF 133
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 685 YCLAVRDYSHAAELFIDCVSXFESYE 762
Y LA + S AA L+ CV FES E
Sbjct: 204 YSLAAKIASSAATLYDSCVHAFESME 229
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 307 YYKEVCNDLGWTFDQKLYDDMTKENQDRLSKFEEDDS 417
Y K++ N L DQ+ D ++E SKFE DDS
Sbjct: 991 YVKDMKNPLA---DQRASLDESRETTTASSKFESDDS 1024
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 361 DDMTKENQDRLSKFEEDDSETPVWQDRLDY-LCSVGDKETAT 483
D+ +NQ ++E++D+ + ++D LDY VG+ ++ T
Sbjct: 1932 DEEDLDNQGEEFEWEDEDNASSGYEDELDYNEDEVGENDSTT 1973
>SPAC664.07c |rad9||checkpoint clamp complex protein
Rad9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 169 LSAEGKTPEYMAL-AGIKFKLSLPEFKDNIQLKEQLLNGIKAGHMAP 306
+S +GK E +AL G+ LSL EF+ + L E L + I A + P
Sbjct: 229 VSIDGKEFERVALNEGVSVTLSLREFRAAVILAEALGSSICAYYGVP 275
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 361 DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVG 465
D N +S EEDDS+ V D+L+ SVG
Sbjct: 95 DHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVG 129
>SPAC29B12.05c |||mitochondrial S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 316 LYNKEPCVQPLFHSITAP 263
LY + PC+ PL+H+ P
Sbjct: 11 LYRENPCLLPLYHATRDP 28
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,917,340
Number of Sequences: 5004
Number of extensions: 57983
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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