Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3o02
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174... 102 3e-22
02_04_0498 + 23480930-23481186,23483615-23483705,23483790-234839... 99 2e-21
01_01_0012 + 71903-72935,73468-73981,74619-76008 31 1.0
06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799... 30 1.8
01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285 29 3.1
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549... 29 5.4
10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766 29 5.4
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127... 28 9.5
>04_04_0296 +
24216284-24216428,24216631-24216745,24217321-24217411,
24217495-24217640,24217745-24217964,24218037-24218145,
24218273-24218441,24218546-24218720
Length = 389
Score = 102 bits (245), Expect = 3e-22
Identities = 63/211 (29%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Frame = +1
Query: 178 EGKTPEYMALAGIKFKLSLPEFKD--NIQLKEQLLNGIKAGHMAPYYKEVCNDLGWTFDQ 351
EGK ++ LA F LS P+ D + L+ +L +K+ MA Y+ + D
Sbjct: 8 EGKQQPHLVLAHKLFLLSHPDVDDLAKVDLRADVLAAVKSDDMASLYESLGAGGVLETDA 67
Query: 352 KLYDDMTKENQDRLSKFEED--DSETPVWQDRLD--------YLCSVGDKETATALATSK 501
L +M ++ + K +E D+E + + + Y VG+KE A
Sbjct: 68 ALLAEMRGRIEEEIRKLDEKIADAEENLGESEVREAHLAKSLYFIRVGEKEKALE-QLKV 126
Query: 502 YEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEA 681
E T+ +++D +F +I +F+ + + K+I+KA +L ++GGDW +N+LK YE
Sbjct: 127 TEGKTVAVGQKMDLVFHTLQIGFFY-MDFDLISKSIDKAKKLFEEGGDWERKNRLKVYEG 185
Query: 682 IYCLAVRDYSHAAELFIDCVSXFESYELVDF 774
+YC+A R++ AA LF+D +S F +YEL +
Sbjct: 186 LYCMATRNFKKAASLFLDSISTFTTYELFPY 216
>02_04_0498 +
23480930-23481186,23483615-23483705,23483790-23483935,
23484029-23484248,23484314-23484422,23484518-23484686,
23484801-23484975
Length = 388
Score = 99 bits (238), Expect = 2e-21
Identities = 62/211 (29%), Positives = 108/211 (51%), Gaps = 12/211 (5%)
Frame = +1
Query: 178 EGKTPEYMALAGIKFKLSLPEFKD--NIQLKEQLLNGIKAGHMAPYYKEVC-------ND 330
E K ++ LA F LS P+ D + L+ L+ +K+ MAP ++ + +D
Sbjct: 7 EAKQERHLVLAHKLFLLSHPDLDDLAKVALRSDALDAVKSDGMAPLFESLAAAGVLEPDD 66
Query: 331 LGWTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLD---YLCSVGDKETATALATSK 501
+ D+ ++ ++++ EE+ E+ V + L Y VG+KE A
Sbjct: 67 ALLAEMRARIDEEVRKLDEKIADAEENLGESEVREAHLAKSLYFMRVGEKEKALE-QLKV 125
Query: 502 YEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELVDKGGDWRSRNKLKAYEA 681
E T+ +++D +F +I FH + + K+I+KA L ++GGDW +N+LK YE
Sbjct: 126 TEGKTVAVGQKMDLVFYTLQIGLFH-MDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEG 184
Query: 682 IYCLAVRDYSHAAELFIDCVSXFESYELVDF 774
+Y +A R++ AA LF+D +S F +YEL +
Sbjct: 185 LYFMATRNFKKAASLFLDSISTFTTYELFPY 215
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 31.1 bits (67), Expect = 1.0
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +1
Query: 346 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDSTLTT 525
D+ L + + D + E E + +DR D L SVG K +L +E T
Sbjct: 735 DEMLNSNSKRSKHDAALECHERKDEDHIEEDRRD-LDSVGSKSEKRSLGNGDHEKQNHDT 793
Query: 526 NRRLD 540
NR+ D
Sbjct: 794 NRKTD 798
>06_02_0364 +
15178583-15178881,15179652-15179723,15179853-15179917,
15180890-15180934,15182493-15183170,15183376-15183410,
15183647-15183736,15183896-15183985,15184164-15184262,
15184938-15185013,15185473-15185588
Length = 554
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 208 PMPCIQVFFPPLIAPFSIDCNASIYQRY*SLFRS 107
P PC V P + PFS+ C + Y S F S
Sbjct: 471 PFPCCHVIVYPFLVPFSLQCEVTNYFSVSSRFGS 504
>01_01_0901 - 7094953-7095231,7095337-7095522,7095785-7096285
Length = 321
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -3
Query: 361 HTTSGQKSSQGHCTPLYNKEPCVQPLFHS 275
H G KS TP+YN P P HS
Sbjct: 31 HDDDGDKSPSTQATPVYNNSPLDSPSHHS 59
>11_04_0430 +
17653553-17654285,17654305-17654627,17654795-17654921,
17655123-17655338,17655463-17655494
Length = 476
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = +1
Query: 337 WTFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGD 468
W D++ DD+ +E +R+ + E +++E V Q+++ L +VG+
Sbjct: 388 WDGDEE--DDVLEEVYERVEREEMEENEAGVQQEKIVQLANVGE 429
>10_08_1036 + 22470642-22470664,22470850-22471024,22471133-22473766
Length = 943
Score = 28.7 bits (61), Expect = 5.4
Identities = 40/176 (22%), Positives = 71/176 (40%), Gaps = 17/176 (9%)
Frame = +1
Query: 154 QLKMELSAEGKTPEYMAL----AGIKFKLSLPEF--KDNIQLKEQLLNGIKAGHMAPYYK 315
Q ++E AE T L +G++ +L E K+++ EQLL+G+K
Sbjct: 223 QSELETKAEEATAIVAKLESEASGLRAELQNAEASRKEDVGRAEQLLHGLKVDIAYAKRA 282
Query: 316 EVCNDLG---W-----TFDQKLYD--DMTKENQDRLSKFEEDDSETP-VWQDRLDYLCSV 462
E +L W + +L++ + K N+D L E + Q + +
Sbjct: 283 EADANLAAQEWKTKAESLQARLHELSSLNKSNEDSLQSLTSSFDECKSMLQHEQSQVVQL 342
Query: 463 GDKETATALATSKYEDSTLTTNRRLDAIFALFRIAYFHGCNVKEMGKAINKAHELV 630
+K ++ +Y++ L TNRRLD + K +N+AH+ V
Sbjct: 343 KEKVSSLEKEAREYKECFLETNRRLDVATKESHQLQATIDRLTSQHKLLNEAHQQV 398
>07_01_0181 +
1274177-1274200,1274335-1276161,1276519-1277448,
1278314-1278367
Length = 944
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +1
Query: 346 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYED 510
+ K Y+++ +E ++ +FE+DD E D D S D E + S+ E+
Sbjct: 162 NNKQYENLIQECREHPERFEDDDVEDKDDDDETDDDASDADIEDPEKMVMSESEE 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,760,823
Number of Sequences: 37544
Number of extensions: 332142
Number of successful extensions: 814
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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