Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n18
         (713 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       26   0.41 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.0  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.0  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.0  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.0  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   6.6  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +3

Query: 573 RRRDKKSEQEKIREEEI 623
           RRR KKSE +KIR   I
Sbjct: 232 RRRSKKSEDDKIRRSSI 248


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 689 PFGNSLYFNVPSSMNI 642
           P  ++LY+N PSS N+
Sbjct: 259 PVTHNLYYNSPSSENL 274


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 549 KTKVSKAQRRRDKKSEQEKIREEE 620
           +T+  + +RRR+   +QE+ RE E
Sbjct: 30  RTQEERLRRRREWMIQQEREREHE 53


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 657 RNIEIQTITKRLEEKNLKI 713
           +NI++  +TK LE KN  I
Sbjct: 91  KNIKLYGLTKNLEIKNYNI 109


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,696
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 16
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)