Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n17
         (313 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   3.5  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    24   6.1  
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    23   8.1  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    23   8.1  

>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 92  LALGPVVGWIKDNASTAVTLHCLNIFTY 175
           L  G    +  D  STA+ LHCL   TY
Sbjct: 638 LTPGSYNAFFADMWSTAIVLHCLYFRTY 665


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 173 YLTAFTWTLEKYITARRQKSTEQDMKA*LNLLYF 274
           +++AF W   K +T    + T +D+K   N  YF
Sbjct: 124 HISAFDWRTGKLLTELHLRETVRDVKWFHNHQYF 157


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 132

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 35 LDKLPGATGLQLITAG 82
          +  LPG++G+QL+ AG
Sbjct: 48 ISPLPGSSGIQLLEAG 63


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 107 VVGWIKDNASTAVTLHCLNIFTYLTAFTWTL-EKYITARRQKSTEQD--MKA*LNLLYF 274
           V+ +I  + +T +T   + +   LTAF W++ +  + +    S ++D  ++   N+LYF
Sbjct: 110 VIRYIYPSENTDITASQMVLCMKLTAFAWSVYDGRLPSSELSSYQKDRALRKIPNILYF 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,183,288
Number of Sequences: 5004
Number of extensions: 21132
Number of successful extensions: 45
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)