Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n17
         (313 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0849 + 20265511-20265984,20266452-20266617,20266694-202669...    27   3.1  
01_07_0114 + 41161923-41163251                                         27   3.1  
04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,557...    26   7.2  
05_07_0331 - 29324967-29326256,29326919-29327020,29327226-293272...    25   9.5  

>04_03_0849 +
           20265511-20265984,20266452-20266617,20266694-20266905,
           20267154-20267647,20267732-20267780,20267922-20268251
          Length = 574

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 118 DQRQRLNCRYITLSEHFHLPDSFYLDP*EIHHCETTKIN*TRYESLIKFTVF 273
           D  + LN R I LS  FH+ + ++LD  +++     K     Y+++ KF ++
Sbjct: 306 DLIRALNSRLIALS--FHIREYYWLDKRKLNEIYRYKTEEYSYDAVNKFNIY 355


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 37  GQIAWRYWTTIDNRRRCLSGIRTCCRLDQRQRLNCRYI 150
           G + W    +      CLSG  TC   +Q+Q   CRY+
Sbjct: 66  GTLVWSTCPSTHTTVSCLSG--TCGAANQQQPRRCRYV 101


>04_01_0422 + 5573833-5574647,5575577-5575692,5576922-5577130,
            5579676-5579795,5581616-5581744,5581828-5581953,
            5582945-5583000,5583084-5583183,5585155-5585272,
            5585374-5585583,5585902-5586226,5587094-5587187,
            5588021-5588129,5588246-5588514,5589153-5589280,
            5589983-5590217,5590858-5591046,5591326-5591609,
            5591698-5591890,5592040-5592207,5592429-5592514,
            5594391-5594550
          Length = 1412

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 62   LQLITAGVVYLALGPVVGWIKDNASTAVTLHCLNI 166
            L+ +  G +   LGPVV WI  + +  +  H + +
Sbjct: 1134 LRTVRQGNIRSTLGPVVSWINSHGNPQLERHGVRV 1168


>05_07_0331 -
           29324967-29326256,29326919-29327020,29327226-29327278,
           29327628-29327674,29327762-29327841,29327933-29328016,
           29328383-29328433,29328925-29329050,29329231-29329347,
           29329710-29329851,29329986-29330053,29330509-29330608,
           29330713-29330840,29330929-29330997,29331083-29331205
          Length = 859

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 134 STAVTLHCLNIFTYLTAFTWTLEKYIT 214
           S A+T+  + + TYLT F W   KY T
Sbjct: 91  SGALTVDGVPVDTYLTRFVWDEGKYPT 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,267,100
Number of Sequences: 37544
Number of extensions: 125460
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 290
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)