Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n17
         (313 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ217660-1|ABB29845.1| 1759|Homo sapiens castor long variant pro...    30   1.3  
AL139423-2|CAI22570.1|  706|Homo sapiens castor zinc finger 1 pr...    29   2.9  
CT841510-1|CAJ86440.1|  357|Homo sapiens bK150C2.2 protein.            28   5.0  
BC053859-1|AAH53859.1|  251|Homo sapiens APOBEC3B protein protein.     28   5.0  

>DQ217660-1|ABB29845.1| 1759|Homo sapiens castor long variant protein.
          Length = 1759

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +1

Query: 34   TGQIAWRYWTTIDNRRRCLSGIRTCCRLDQRQRLNCRYITLSEHFH 171
            T ++ W         RR  +G +   + ++  RL C+Y  +S HFH
Sbjct: 1256 TTKLPWHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVSSHFH 1301


>AL139423-2|CAI22570.1|  706|Homo sapiens castor zinc finger 1
           protein.
          Length = 706

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 34  TGQIAWRYWTTIDNRRRCLSGIRTCCRLDQRQRLNCRYITLSEHFH 171
           T ++ W         RR  +G +   + ++  RL C+Y  ++ HFH
Sbjct: 203 TTKLPWHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFH 248


>CT841510-1|CAJ86440.1|  357|Homo sapiens bK150C2.2 protein.
          Length = 357

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 130 VVFDPTYNRS*CQINNACGYQL*SSSARQFVQWYICW 20
           V F+P Y+   C ++  CG QL +    Q + W++ W
Sbjct: 59  VYFEPQYHAEMCFLSWFCGNQLPAYKCFQ-ITWFVSW 94


>BC053859-1|AAH53859.1|  251|Homo sapiens APOBEC3B protein protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 130 VVFDPTYNRS*CQINNACGYQL*SSSARQFVQWYICW 20
           V F+P Y+   C ++  CG QL +    Q + W++ W
Sbjct: 59  VYFEPQYHAEMCFLSWFCGNQLPAYKCFQ-ITWFVSW 94


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,122,836
Number of Sequences: 237096
Number of extensions: 739806
Number of successful extensions: 1303
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1459139350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)