Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3n17
(313 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical pr... 35 0.014
Z96047-7|CAB09413.1| 561|Caenorhabditis elegans Hypothetical pr... 28 1.6
U23521-4|AAC46816.4| 389|Caenorhabditis elegans Hypothetical pr... 27 3.6
Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical pr... 26 4.8
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec... 26 4.8
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l... 26 4.8
AF332208-1|AAK17979.1| 435|Caenorhabditis elegans nuclear recep... 26 6.4
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 25 8.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 25 8.4
U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cycla... 25 8.4
AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor typ... 25 8.4
>Z79759-8|CAE45097.1| 619|Caenorhabditis elegans Hypothetical
protein ZK858.6 protein.
Length = 619
Score = 34.7 bits (76), Expect = 0.014
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 35 LDKLPGATGLQLITAGVVYLALGPVVGWIKDNASTAVTLHCLNIFTY 175
+D LP AT + +G VY LG +GWI DNA + H + Y
Sbjct: 130 VDNLPVATVINPAQSGDVYYDLGYRLGWIGDNAKVFLNNHLQFVVKY 176
>Z96047-7|CAB09413.1| 561|Caenorhabditis elegans Hypothetical
protein DY3.4a protein.
Length = 561
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +1
Query: 52 RYWTTIDNRRRCLSGIRTCCRLDQRQRLNCRYIT 153
R+W TI + LS +R + +RQ+LN R+++
Sbjct: 23 RHWNTIIRKSAHLSLVRNIFKKKRRQKLNYRHMS 56
>U23521-4|AAC46816.4| 389|Caenorhabditis elegans Hypothetical
protein F41C3.11 protein.
Length = 389
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 146 TLHC--LNIFTYLTAFTWTLEKYITARRQKSTEQDMKA*LNL 265
T+ C LNI TY T + W ++YI ++ D+ A N+
Sbjct: 182 TIKCVSLNIDTYKTGYEWGKQEYINILTLRANLMDLLATNNI 223
>Z82055-8|CAB04850.2| 463|Caenorhabditis elegans Hypothetical
protein T26H2.9 protein.
Length = 463
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +1
Query: 28 CTTGQIAWRYWTTIDNRRRCLSGIRTCCRLDQRQRLNCRYITLSE 162
C +R +D CL C++D RLNCR+ L +
Sbjct: 24 CKACAAFFRRSIAMDQCYECLGDGVHSCKIDHTLRLNCRHCRLKK 68
>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin receptor
protein 2 protein.
Length = 1338
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 101 GPVVGWIKDNASTAVTLHCLNIFTYLTA 184
G ++GW+K +A+ L IF +LTA
Sbjct: 1078 GRIIGWLKGSATLLCLLGITWIFGFLTA 1105
>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
protein LAT-2 protein.
Length = 1338
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 101 GPVVGWIKDNASTAVTLHCLNIFTYLTA 184
G ++GW+K +A+ L IF +LTA
Sbjct: 1078 GRIIGWLKGSATLLCLLGITWIFGFLTA 1105
>AF332208-1|AAK17979.1| 435|Caenorhabditis elegans nuclear receptor
NHR-79 protein.
Length = 435
Score = 25.8 bits (54), Expect = 6.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 67 IDNRRRCLSGIRTCCRLDQRQRLNCRYITLSE 162
+D CL C++D RLNCR+ L +
Sbjct: 9 MDQCYECLGDGVHSCKIDHTLRLNCRHCRLKK 40
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 147 VTAVEALSLIQPTTGPNAR*TTPAVINCSPVAPGNLSSGT 28
VT L+ PT P + P+ + SP AP NL++ T
Sbjct: 614 VTTSPTLAPTSPTKLPTS---PPSTVGTSPTAPANLTTPT 650
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 147 VTAVEALSLIQPTTGPNAR*TTPAVINCSPVAPGNLSSGT 28
VT L+ PT P + P+ + SP AP NL++ T
Sbjct: 670 VTTSPTLAPTSPTKLPTS---PPSTVGTSPTAPANLTTPT 706
>U42436-12|AAF99901.1| 1206|Caenorhabditis elegans Guanylyl cyclase
protein 8 protein.
Length = 1206
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 98 LGPVVGWIKDNASTAVTLHCLNIFTYLTAFTWTLEKYITARRQKSTE 238
+GP + IKD T + NI+ YL F L+ Y A R+ E
Sbjct: 367 VGPFIERIKDVGLTEADVDIANIYGYLYLFD-ALKLYAIAARKVLNE 412
>AB201388-1|BAE78828.1| 1152|Caenorhabditis elegans recepotor type
guanyly cyclase protein.
Length = 1152
Score = 25.4 bits (53), Expect = 8.4
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +2
Query: 98 LGPVVGWIKDNASTAVTLHCLNIFTYLTAFTWTLEKYITARRQKSTE 238
+GP + IKD T + NI+ YL F L+ Y A R+ E
Sbjct: 341 VGPFIERIKDVGLTEADVDIANIYGYLYLFD-ALKLYAIAARKVLNE 386
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,608,341
Number of Sequences: 27780
Number of extensions: 121846
Number of successful extensions: 308
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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