Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3n15
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 48 1e-06
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ... 44 2e-05
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom... 42 9e-05
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 41 2e-04
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 40 3e-04
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 40 3e-04
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa... 40 5e-04
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p... 39 8e-04
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy... 39 8e-04
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 38 0.001
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 30 0.37
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 30 0.37
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 26 4.6
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 26 4.6
SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase Tpp1|Schi... 26 6.0
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 6.0
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 6.0
SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 25 8.0
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 48.4 bits (110), Expect = 1e-06
Identities = 37/145 (25%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Frame = +3
Query: 273 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPIL-ILVARFLAGISGGGLLVMAPIF 449
I G L + GRK I + ++ +IV++++ + ++V RF+ G G ++ P++
Sbjct: 146 IAGALADFFGRKPV-IAIASIIIIVGSIVQVTAHHLWHMIVGRFVIGWGVGIASLIIPLY 204
Query: 450 ISXIADDSIRGALASSPLFLYCVGVLLSYIIGW-FSTYH----VIIWISLALSVTGVFLF 614
+S IA IRG L + L G +++Y I F H ++ +++ + +F+
Sbjct: 205 LSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGWRWMVGLAMVPAAFQLFIL 264
Query: 615 LLSTESPIYYMRKQREKDARASIAR 689
+ ESP ++K+R ++A ++AR
Sbjct: 265 IWLPESPRLLVKKERSQEAYNTLAR 289
>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 546
Score = 44.4 bits (100), Expect = 2e-05
Identities = 35/152 (23%), Positives = 78/152 (51%), Gaps = 9/152 (5%)
Frame = +3
Query: 273 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 446
++ L++ +G++ + T+ ++ I+++++ P + I+VA+ G+S G L V+AP
Sbjct: 75 LSSPLMDRIGKRTSIMFWTIVYLIG-IILQVTAVPSWVQIMVAKIWTGLSIGALSVLAPG 133
Query: 447 FISXIADDSIRGALASSPLFLYCVGVLLSYII--GWFSTYHVIIW-ISLALSVT-GVFLF 614
F S +A +RG + ++ G+ ++ I G + W +S+ +++ G+ F
Sbjct: 134 FQSEVAPADLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIITF 193
Query: 615 L---LSTESPIYYMRKQREKDARASIARYKGL 701
+ ESP Y + R+++A +A+ L
Sbjct: 194 IGISFLPESPRYLISVGRDEEALQIMAKNNDL 225
>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 535
Score = 41.9 bits (94), Expect = 9e-05
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Frame = +3
Query: 342 LSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPIFISXIADDSIRGALASSPLFLYC 515
++ IV+L++ P + ++VA+ G+ G L V+AP + S + IRGA+ ++
Sbjct: 97 ITGVIVQLTTIPSWVQMMVAKIWTGLGIGALSVIAPGYQSESSPPHIRGAIVTTYQLFIT 156
Query: 516 VGVLLSYIIGW----FST-----YHVIIWISLALSVTGVFLFLLSTESPIYYMRKQREKD 668
+G+ ++ I ++T + V I I+L + F L ESP Y K R ++
Sbjct: 157 LGIFIAACINMGTHKYTTHPEAQWRVPIGINLLWGILMFFGMLFLPESPRYLAVKGRNEE 216
Query: 669 ARASIARYKGL 701
+ R GL
Sbjct: 217 CMKILTRNAGL 227
>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 547
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/142 (21%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Frame = +3
Query: 273 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 446
++ L++ +G++ + T+ ++ I+++++ P + I+VA+ G++ G L V+AP
Sbjct: 75 LSSPLMDRIGKRVSIMFWTIVYLIG-IILQVTAVPSWVQIMVAKIWTGLAIGALSVLAPG 133
Query: 447 FISXIADDSIRGALASSPLFLYCVGVLLSYII--GWFSTYHVIIW-ISLALSVT-GVFLF 614
F S +A ++RG + ++ G+ ++ I G + W +S+ +++ G+ +F
Sbjct: 134 FQSEVAPATLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIIMF 193
Query: 615 L---LSTESPIYYMRKQREKDA 671
+ ESP Y + ++++A
Sbjct: 194 IGISFLPESPRYLIAIGKDEEA 215
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 40.3 bits (90), Expect = 3e-04
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 9/126 (7%)
Frame = +3
Query: 279 GTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISX 458
G N LGRK + F +L + S + I ++V R + G+ GGG++ + I IS
Sbjct: 152 GVFCNILGRKIVLYICIFFFMLGSALCGASQNMIWLIVCRAIQGLGGGGIISLVNIIISD 211
Query: 459 IADDSIR----GALASSPLFLYCVGVLLSYIIGWFSTYHVIIWISL-----ALSVTGVFL 611
I R G LA++ G ++ I +T+ I +I+L A ++ VFL
Sbjct: 212 ITPLRTRPMYSGILATAWGAALVAGPIIGGAICQRTTWRWIFFINLPSGGIATALIVVFL 271
Query: 612 FLLSTE 629
LL E
Sbjct: 272 HLLPCE 277
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 39.9 bits (89), Expect = 3e-04
Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Frame = +3
Query: 273 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 446
I+ + +G++N I + ++ I+++++ P + I+VA+ G+ G L V+AP
Sbjct: 75 ISSPTTDRIGKRNSIIGFCVIYLIG-VIIQVTAVPSWVQIMVAKIWTGLGIGALSVLAPG 133
Query: 447 FISXIADDSIRGALASSPLFLYCVGVLLSYII--GWFSTYHVIIW-ISLALSVTGVFLFL 617
+ S +A IRG + + G+ ++ I G Y W +S+ +++ + L
Sbjct: 134 YQSEVAPPHIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKTAQWRVSIGINLLWGIITL 193
Query: 618 LS----TESPIYYMRKQREKDA 671
+ +ESP Y + ++ +A
Sbjct: 194 VGVSFLSESPRYLVSIGKDDEA 215
>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
Ght7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 39.5 bits (88), Expect = 5e-04
Identities = 32/144 (22%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Frame = +3
Query: 273 ITGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSP--ILILVARFLAGISGGGLLVMAPI 446
++ + + +G++ IV T ++ I+++++ P + ILVA+ G+S G L V+ P
Sbjct: 43 LSSPVADKIGKRLSIIVWTTVYLIG-IIIQVTTVPSWVQILVAKIWTGLSIGALSVITPG 101
Query: 447 FISXIADDSIRGALASSPLFLYCVGVLLS---------YIIGWFSTYHVIIWISLALSVT 599
+ S +A +RGA+ ++ +G+ ++ Y G + + + I I+L +
Sbjct: 102 YQSEVAPAIMRGAIVTTYQLFITLGIFIAACINMGTHKYSHGTTAQWRISIGINLLWGII 161
Query: 600 GVFLFLLSTESPIYYMRKQREKDA 671
+ + ESP Y + ++ +A
Sbjct: 162 TLVGIIFLPESPRYLIAIGKDDEA 185
>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 555
Score = 38.7 bits (86), Expect = 8e-04
Identities = 34/113 (30%), Positives = 57/113 (50%), Gaps = 7/113 (6%)
Frame = +3
Query: 354 IVELSSSPILILVARFLAGISGGGLLVMAPIFISXIADDSIRGA-LASSPLFLYCVGVLL 530
+V S I +LV + LAG+ G L V++P + S +A IRGA +A+ +F ++
Sbjct: 103 LVTAVPSWIQVLVGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFSTGAALVA 162
Query: 531 SYI-IGWFSTYHVIIW-ISLALSVT-GVFLF---LLSTESPIYYMRKQREKDA 671
+ I +G W S +++ G+ L L ESP Y + K R+++A
Sbjct: 163 ACINMGTHKLRKTASWRTSFGINMLWGILLMVGVLFLPESPRYLIYKGRDEEA 215
>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 557
Score = 38.7 bits (86), Expect = 8e-04
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 5/130 (3%)
Frame = +3
Query: 276 TGTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFIS 455
+G L + +GRK + V+ I+ S + +++V RF+ G G ++ P++I+
Sbjct: 140 SGWLADWVGRKRLLLCADAIFVIGSVIMAASRNVAMMVVGRFIVGYGIGLTSLIVPMYIT 199
Query: 456 XIADDSIRGALASSPLFLYCVGVLLSYII-GWFSTYH----VIIWISLALSVTGVFLFLL 620
+A +RG L + G L++Y + F H ++ I A ++ +
Sbjct: 200 ELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEHVHQGWRIMFGIGAAPALGQLISLFW 259
Query: 621 STESPIYYMR 650
+ ESP Y +R
Sbjct: 260 TPESPRYLLR 269
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 38.3 bits (85), Expect = 0.001
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Frame = +3
Query: 354 IVELSSSP--ILILVARFLAGISGGGLLVMAPIFISXIADDSIRGALASSPLFLYCVGVL 527
IV++++ P + I+VA+ GI G L V+AP + S A SIRG + + G+
Sbjct: 105 IVQVTAVPSWVQIMVAKIWTGIGIGALSVLAPGYQSETAPPSIRGTVVVTYQLFVTGGIF 164
Query: 528 LSYIIGW-------FSTYHVIIWISLALSVTGVFLFLLSTESPIYYMRKQREKDA 671
++ I + + V I I+L + + L ESP Y ++ ++++A
Sbjct: 165 IAACINMGTHKLHKTAQWRVSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEA 219
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 29.9 bits (64), Expect = 0.37
Identities = 26/89 (29%), Positives = 37/89 (41%)
Frame = +3
Query: 279 GTLINSLGRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISX 458
G L + GR+ + L +S S + +AR LAGI GGGL M+ I S
Sbjct: 87 GRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARALAGIGGGGLGTMSSIISSD 146
Query: 459 IADDSIRGALASSPLFLYCVGVLLSYIIG 545
I RG ++ +G L +G
Sbjct: 147 IVSLRERGTWQGITNIVWGIGGSLGGPLG 175
>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 462
Score = 29.9 bits (64), Expect = 0.37
Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Frame = +3
Query: 312 GGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISXIADDSIRG--- 482
G ++ +FN+ L+ + + + RFLAG + + IS + RG
Sbjct: 118 GNVIFIVFNMACG----LARTKAQMYIFRFLAGFGSATPMGLGSGTISDLFTPDERGKAV 173
Query: 483 -ALASSPLFLYCVGVLLSYIIGWFSTYHVIIWISLALSVTGVFLFLLS 623
++ +PL +G ++S I ++TY I W + ++ F+F LS
Sbjct: 174 AVMSLAPLLGPTIGPVVSGFIAEYTTYKWIFW---STTIFSGFIFALS 218
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 384 ILVARFLAGISGGGLLVMAPIFISXIADDSIRGALASSPLFLYCVGVLLSYIIGWF 551
++ AR +AGI GGG+ I +S I RG + +G L +G +
Sbjct: 180 LVAARAIAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGY 235
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -1
Query: 448 NIGAITSKPPPEIPARNLATRISIGDELSSTMVHDKTLNR 329
N G + +P P P N+ TRI I + S + + +NR
Sbjct: 631 NSGQSSGRPGPLSPNLNVTTRIDIKGKKGSMHLQPRDVNR 670
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = -1
Query: 355 MVHDKTLNRVKTIPPF---FLPRLLISVPVMAVPSIAPNDGRLPRRD 224
++H T N T F FL L IS+PV +P+IAP LP +
Sbjct: 380 VMHIPTTNSPLTPQSFTNSFLGYLPISMPVANMPAIAPISVALPENN 426
>SPAC19G12.15c |tpp1||trehalose-6-phosphate phosphatase
Tpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 329 SVQCFIMDHSGTKFITDTDPGCEVPSRNL 415
S + F+MD+ GT DP VPS+ L
Sbjct: 563 SKRLFMMDYDGTLTPIVRDPNAAVPSKKL 591
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 6.0
Identities = 23/88 (26%), Positives = 34/88 (38%)
Frame = +3
Query: 300 GRKNGGIVLTLFNVLSWTIVELSSSPILILVARFLAGISGGGLLVMAPIFISXIADDSIR 479
GRK G +V ++L S S I+ RF AG+ G +V + ++ + + R
Sbjct: 120 GRKIGVLVPFFLSILFTIGTASSDSVAAIMCTRFFAGLFAGAPVVSSGGVMADLWCPAQR 179
Query: 480 GALASSPLFLYCVGVLLSYIIGWFSTYH 563
G F G II T H
Sbjct: 180 GTALIFYAFFVVSGADFGPIISSLVTEH 207
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +2
Query: 305 KKWWNRFNSVQCFIMDHSGTKFITDTDPG 391
K W R S F +H ++ + +DPG
Sbjct: 228 KNWKTRIYSFSVFFPEHMDSRVLVQSDPG 256
>SPCC16C4.05 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 201
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 408 RLGTSQPGSVSVMNLVPLWSMIK 340
+LG S+ G+++V + PLW +K
Sbjct: 127 KLGLSRAGAIAVQDDSPLWKYLK 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,966,332
Number of Sequences: 5004
Number of extensions: 63064
Number of successful extensions: 215
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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