Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n12
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735...    30   1.8  
05_03_0565 - 15509949-15511304                                         29   3.1  
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306     29   3.1  
06_03_0282 + 19142841-19143344,19144653-19144814,19146308-19146388     29   4.1  
03_06_0514 + 34450178-34450244,34450821-34451047,34451140-344512...    29   5.4  
07_03_1737 + 29137654-29137842,29137999-29138061,29138196-291382...    28   7.1  
03_03_0150 + 14872035-14872472,14874895-14875725                       28   7.1  
07_03_0537 - 19218461-19218982,19219482-19219868,19219993-192201...    28   9.4  

>10_08_0789 +
           20569738-20570207,20573425-20573464,20573484-20573536,
           20573633-20574212,20574323-20575384,20575631-20575813,
           20576112-20576199,20576285-20576532,20576712-20577053,
           20579026-20579163,20579521-20579547
          Length = 1076

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +3

Query: 168 GIEEKVQQLTDITAKKSVIPLNI 236
           G+E+ VQQLT IT  K V+PL I
Sbjct: 497 GLEDNVQQLTIITRVKEVLPLMI 519


>05_03_0565 - 15509949-15511304
          Length = 451

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 645 LFIILAGFLYIRRNNLEFLYNKQLWAVCAV-FXCFAWC 755
           LF++ AG+L     NL  +Y K    +CA  F C  WC
Sbjct: 237 LFVLTAGYLPFNDGNLMAMYRK----ICAAKFRCPKWC 270


>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
          Length = 433

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 645 LFIILAGFLYIRRNNLEFLYNKQLWAVCAV-FXCFAWC 755
           LF++ AG+L     NL  +Y K    +CA  F C  WC
Sbjct: 253 LFVLTAGYLPFNDGNLMAMYRK----ICAAKFRCPKWC 286


>06_03_0282 + 19142841-19143344,19144653-19144814,19146308-19146388
          Length = 248

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 508 LGLPLAGKCIITGAVLSRNIWKISEPSSKSTIP 410
           LG P+A    I+G V  +N  ++ EP++  T+P
Sbjct: 56  LGSPIAAAACISGVVGGQNHQQLPEPAAAKTVP 88


>03_06_0514 +
           34450178-34450244,34450821-34451047,34451140-34451275,
           34451818-34451951,34452037-34452142,34452602-34452687,
           34453204-34453365,34453918-34454034,34454222-34454464
          Length = 425

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 346 MNICWWPTHLDSQLL 390
           +++CWWP H  S LL
Sbjct: 8   LSVCWWPPHFKSPLL 22


>07_03_1737 +
           29137654-29137842,29137999-29138061,29138196-29138267,
           29138411-29138518,29138615-29138695,29138818-29138871,
           29138956-29139081,29139162-29139251,29139444-29139566,
           29139667-29139777,29139927-29140040,29140214-29140270,
           29140350-29140424,29140526-29140600
          Length = 445

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 645 LFIILAGFLYIRRNNLEFLYNKQLWAVCAVFXCFAW 752
           LF++LAG+L     N+  LYNK      A F C +W
Sbjct: 210 LFVLLAGYLPFEDENIVSLYNK---ISGAQFTCPSW 242


>03_03_0150 + 14872035-14872472,14874895-14875725
          Length = 422

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 1/98 (1%)
 Frame = +3

Query: 288 VMFTAMAPARRCAICQHVNDEYLLVANSFRFSAAYNNKLFFGIVDFDEGSDIFQMLRLNT 467
           V+   +APA  CAIC H  D     A   R+        F G+        +FQ+ + N 
Sbjct: 104 VVVDQLAPAAECAICLHGQDAATAAAG--RWKEMPCGHRFHGVC--LPRICVFQLRQGNL 159

Query: 468 APVIMHFPAKGKPKPADTMDFERAGIH-AEAIAKWIQD 578
           AP  +       P+P    D + AG+H A  +A  +Q+
Sbjct: 160 APGAV----SDSPEPEGGRDVQ-AGVHEARGLAGGVQE 192


>07_03_0537 -
           19218461-19218982,19219482-19219868,19219993-19220154,
           19220464-19221117,19221233-19221277,19223300-19223845,
           19223930-19224307,19224642-19225313,19225373-19225456
          Length = 1149

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = -2

Query: 508 LGLPLAGKCIITGAVLSRNI 449
           LG+P+ G+ + TGAVL++++
Sbjct: 655 LGIPVTGRVVTTGAVLNKSV 674


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,168,162
Number of Sequences: 37544
Number of extensions: 374835
Number of successful extensions: 841
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)