Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n12
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical pr...   196   1e-50
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    31   0.90 
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    31   0.90 
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     29   3.6  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     29   3.6  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    29   3.6  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    29   3.6  
Z70205-9|CAA94121.1|  191|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AL031265-1|CAA20327.1|  191|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical ...    28   8.4  
AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical ...    28   8.4  
AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical ...    28   8.4  

>L17337-3|AAA28222.1|  331|Caenorhabditis elegans Hypothetical
           protein ZK686.3 protein.
          Length = 331

 Score =  196 bits (479), Expect = 1e-50
 Identities = 88/212 (41%), Positives = 144/212 (67%), Gaps = 3/212 (1%)
 Frame = +3

Query: 138 YEGAAQPRAKGIEEKVQQLTDITAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPAR 317
           YE A Q   + +E+KVQ L D+T+++S++  N++K+K  V+  PR+YS +VMFTA++P  
Sbjct: 6   YESAQQ---QTLEDKVQNLVDLTSRQSIVKFNMDKWKTLVRMQPRNYSMIVMFTALSPGV 62

Query: 318 RCAICQHVNDEYLLVANSFRFSAAYNN--KLFFGIVDFDEGSDIFQMLRLNTAPVIMHF- 488
           +C IC+   DE+++VANS R++++  +  K+FFGIVD+++   IFQ + LNTAP++ HF 
Sbjct: 63  QCPICKPAYDEFMIVANSHRYTSSEGDRRKVFFGIVDYEDAPQIFQQMNLNTAPILYHFG 122

Query: 489 PAKGKPKPADTMDFERAGIHAEAIAKWIQDRTDVQIRVFRSPNYSAAVAFSTLFIILAGF 668
           P  G  K  + MDF+R G  A+AI +++ D+T+V +RV R PNY+A V  +    +L G 
Sbjct: 123 PKLGAKKRPEQMDFQRQGFDADAIGRFVADQTEVHVRVIRPPNYTAPVVIALFVALLLGM 182

Query: 669 LYIRRNNLEFLYNKQLWAVCAVFXCFAWCLGR 764
           LY++RN+L+FL+N+ +W    +   F +  G+
Sbjct: 183 LYMKRNSLDFLFNRTVWGFVCLAITFIFMSGQ 214


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 409 LVLLILMKAQISSKCYGLILHL**CTSQLKANLSLLTQWTLRELASMLRPS 561
           +V+L    A+ + KC  L  H+  C  +L+    ++  + LRE AS+L PS
Sbjct: 595 IVILQRKLARRTEKCEFLEEHVRQCLEELQKKTKIIQHFALREEASLLMPS 645


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 409 LVLLILMKAQISSKCYGLILHL**CTSQLKANLSLLTQWTLRELASMLRPS 561
           +V+L    A+ + KC  L  H+  C  +L+    ++  + LRE AS+L PS
Sbjct: 595 IVILQRKLARRTEKCEFLEEHVRQCLEELQKKTKIIQHFALREEASLLMPS 645


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 341
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 60  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 105


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 341
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 64  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 109


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 341
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 60  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 105


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +3

Query: 204 TAKKSVIPLNINKFKEYVKSPPRDYSFVVMFTAMAPARRCAICQHV 341
           T+  SV+P   ++      +PPR   +  M  + +  R+C +C+H+
Sbjct: 64  TSSSSVLPSTSSEPPPPASAPPRISIYHKMVPSKSKFRQCDVCEHI 109


>Z70205-9|CAA94121.1|  191|Caenorhabditis elegans Hypothetical
           protein C11H1.7 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 554 LSMDASSLKVHCVSRLRFAFSWEVHYHRCS 465
           +  +A S+KVH  +RL+F F W   + R S
Sbjct: 38  MEFEAKSVKVHKQTRLKFLFIWFFLFQRLS 67


>AL031265-1|CAA20327.1|  191|Caenorhabditis elegans Hypothetical
           protein C11H1.7 protein.
          Length = 191

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 554 LSMDASSLKVHCVSRLRFAFSWEVHYHRCS 465
           +  +A S+KVH  +RL+F F W   + R S
Sbjct: 38  MEFEAKSVKVHKQTRLKFLFIWFFLFQRLS 67


>AF003137-7|AAN84856.1|  433|Caenorhabditis elegans Hypothetical
           protein C27A12.7b protein.
          Length = 433

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -2

Query: 613 GDRKTRICTSV-----LSCIHLAMASAWMPALSKSIVS 515
           GD +  IC S+     LSC H A A  W   L+  IVS
Sbjct: 63  GDAECDICCSMDELSGLSCNHRACAECWQAYLTNKIVS 100


>AF003137-6|AAB93644.1|  497|Caenorhabditis elegans Hypothetical
           protein C27A12.7a protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -2

Query: 613 GDRKTRICTSV-----LSCIHLAMASAWMPALSKSIVS 515
           GD +  IC S+     LSC H A A  W   L+  IVS
Sbjct: 127 GDAECDICCSMDELSGLSCNHRACAECWQAYLTNKIVS 164


>AF003137-5|AAB93643.1|  491|Caenorhabditis elegans Hypothetical
           protein C27A12.6 protein.
          Length = 491

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
 Frame = -2

Query: 613 GDRKTRICTSV-----LSCIHLAMASAWMPALSKSIVS 515
           GD +  IC S+     LSC H A A  W   L+  IVS
Sbjct: 122 GDAECDICCSMDELSGLSCNHRACAECWQAYLTNKIVS 159


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,657
Number of Sequences: 27780
Number of extensions: 351075
Number of successful extensions: 828
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)