Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n11
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    27   3.0  
SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.0  
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|...    26   5.2  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   6.8  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   6.8  
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    26   6.8  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   9.0  

>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 690 NLLNYIVFLRVTPFLPNWFI 749
           N+LN++  LR+ PF P  FI
Sbjct: 305 NILNHMTRLRIVPFAPGHFI 324


>SPBC1347.14c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 510 SILSGFLFPFYFALVLVCCCSAIGASLCFFLSNL 611
           SI   F+FPFY+ L+++   + IG S C   S L
Sbjct: 10  SIFQFFVFPFYYFLLII---TEIGFSSCIQYSGL 40


>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/82 (18%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +3

Query: 378 LEDAKQLGLVLDRYKDRYFYEVLFGVFL-VYIFLQTFAIPGSIFLSILSGFLFPFYFALV 554
           + D  Q+ L+   +   ++  +   V L   +FL+   + GS+++   S ++   +++L 
Sbjct: 286 IADIPQITLIFISFLFSFYVLIFIWVRLFARLFLRGSTLVGSVWVLPRSSWVLASFYSLH 345

Query: 555 LVCCCSAIGASLCFFLSNLLGK 620
            +  C+   A  C  +S+++ +
Sbjct: 346 FLWLCTFFHALQCAIISSIVSQ 367


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 598  SCQIFLERSLLENSSQKEQQSG 663
            SC +F E+S +EN   KE+ +G
Sbjct: 984  SCLVFQEKSEVENQRMKEELAG 1005


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 429 YFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPF 539
           YFY V+  + +V +   +F+I  ++FL+  +G L PF
Sbjct: 183 YFYPVISYLVVVSLAYVSFSIIYALFLNPWTGSLDPF 219


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 640 KNFLTSFFPRRFDKKKHRLAPIAEQQQTNTSAK*KGKR 527
           K +LT F  R+ +++KH    + +Q++    A  K  R
Sbjct: 35  KEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLR 72


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux
           transporter Bfr1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1530

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 32/147 (21%), Positives = 51/147 (34%), Gaps = 6/147 (4%)
 Frame = +3

Query: 318 YRQFPXXXXXXXXXXXXPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPG 497
           YRQ              P+ +  ++QL   L R  +RY  +  +   + + FL    I G
Sbjct: 497 YRQSAVAEKSKRVKDTSPYTVTFSQQLWYCLARSWERYINDPAYIGSMAFAFLFQSLIIG 556

Query: 498 SIFLSILSGFLFPF-----YFALVLVCCCSAIGASLCFFLSN-LLGKKLVRKFFPERAAE 659
           SIF  +    +  F      F  +L C   ++      F    ++ K      +   A  
Sbjct: 557 SIFYDMKLNTVDVFSRGGVLFFSILFCALQSLSEIANMFSQRPIIAKHRASALYHPAADV 616

Query: 660 WSKAVAKHKDNLLNYIVFLRVTPFLPN 740
            S  +       +N  VF  V  FL N
Sbjct: 617 ISSLIVDLPFRFINISVFSIVLYFLTN 643


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,622,567
Number of Sequences: 5004
Number of extensions: 47686
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)