Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n11
         (767 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0383 - 28497525-28497689,28497776-28497946,28498115-284983...   126   2e-29
04_04_0989 - 29948834-29948995,29949083-29949253,29949369-299496...   126   3e-29
03_05_0838 + 28093752-28094011,28095238-28095508,28095640-280958...   117   1e-26
07_03_1534 + 27526170-27526265,27527030-27527091,27527488-275275...    39   0.005
01_06_1012 - 33806190-33807875,33807963-33808331                       33   0.19 
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448...    28   9.4  

>02_05_0383 -
           28497525-28497689,28497776-28497946,28498115-28498385,
           28499576-28499736
          Length = 255

 Score =  126 bits (304), Expect = 2e-29
 Identities = 62/133 (46%), Positives = 89/133 (66%)
 Frame = +3

Query: 369 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 548
           P +L++ + L   L+ Y   Y  +VL G   VYIF+QTF IPG+IF+S+L+G LF     
Sbjct: 44  PKNLQELQILTDHLEDYTSDYTVQVLVGYCAVYIFMQTFMIPGTIFMSLLAGALFGQLGG 103

Query: 549 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 728
           + LV   +  GAS C+FLS L+GK LV   +P++   + K VAK ++ LLNY++FLRVTP
Sbjct: 104 VALVVFAATAGASSCYFLSKLIGKPLVFSLWPDKLGFFQKQVAKRREKLLNYMLFLRVTP 163

Query: 729 FLPNWFINMSAPV 767
            LPN FIN+++P+
Sbjct: 164 TLPNTFINLASPI 176


>04_04_0989 -
           29948834-29948995,29949083-29949253,29949369-29949639,
           29950459-29950533,29950706-29950866
          Length = 279

 Score =  126 bits (303), Expect = 3e-29
 Identities = 60/120 (50%), Positives = 83/120 (69%)
 Frame = +3

Query: 408 LDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGAS 587
           L+ Y   Y  +VL G   VYIF+QTF IPG+IF+S+L+G LF     + LV   ++ GAS
Sbjct: 82  LENYTSDYTIQVLVGYCSVYIFMQTFMIPGTIFMSLLAGSLFGQLRGVALVVFAASAGAS 141

Query: 588 LCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFINMSAPV 767
            CFFLS L+GK LV   +P++   + K VAK ++ LLNY++FLRVTP LPN FIN+++P+
Sbjct: 142 SCFFLSKLIGKPLVFSLWPDKLMFFQKQVAKRREKLLNYMLFLRVTPTLPNTFINLASPI 201


>03_05_0838 +
           28093752-28094011,28095238-28095508,28095640-28095810,
           28096238-28096369
          Length = 277

 Score =  117 bits (281), Expect = 1e-26
 Identities = 57/133 (42%), Positives = 83/133 (62%)
 Frame = +3

Query: 369 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 548
           P  L D + L   L  Y   Y    + G   +YIF+QTF IPG+IF+S+L+G LF     
Sbjct: 77  PRSLADVRLLKDNLAVYARDYQANFILGYCSIYIFMQTFMIPGTIFMSLLAGALFGVVKG 136

Query: 549 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 728
            +LV   +  GAS C+F+S L+G+ L+   +PE+   +   +AK K+ LLNY++FLR+TP
Sbjct: 137 GILVVFTATAGASSCYFVSKLIGRPLISWLWPEKLRYFQSEIAKRKEKLLNYMLFLRITP 196

Query: 729 FLPNWFINMSAPV 767
            LPN FINM++P+
Sbjct: 197 TLPNTFINMASPI 209


>07_03_1534 +
           27526170-27526265,27527030-27527091,27527488-27527542,
           27528168-27528266,27528346-27528432,27528951-27529067,
           27529479-27529571,27529915-27529945,27530188-27530357
          Length = 269

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 27/98 (27%), Positives = 44/98 (44%)
 Frame = +3

Query: 459 LVYIFLQTFAIPGSIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 638
           L Y+ L   A+P SI L++  G+LF      V     + IGA+  F L   +G+  V   
Sbjct: 55  LAYVPLTVLAVPASI-LTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYVLSK 113

Query: 639 FPERAAEWSKAVAKHKDNLLNYIVFLRVTPFLPNWFIN 752
             +     + A+A  +      ++ LR+ P LP   +N
Sbjct: 114 CKDYPKFQAVAIAIERSG-FKIVLLLRLVPLLPFNMLN 150


>01_06_1012 - 33806190-33807875,33807963-33808331
          Length = 684

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
 Frame = +3

Query: 462 VYIFLQTFAIPGSIFLSILS-GFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKF 638
           V IF+      G++ L + + G +   Y+    +  C+      C  LS+LL K  ++ F
Sbjct: 329 VDIFITNLLFGGALCLEVYAIGMMLISYWTYAALQGCN------CRTLSHLLFKS-IKYF 381

Query: 639 FPERAAEWSKAVAKHKDNLLNYIVFLRVT 725
            PE   +WS  +A+H  NL++Y +  R T
Sbjct: 382 RPESRPKWSNLMAQH--NLISYCLHDRAT 408


>08_01_0514 +
           4481383-4481903,4482532-4484590,4485038-4485107,
           4485434-4485660,4486238-4486324,4486408-4487114,
           4487206-4487270,4487323-4487837,4487898-4487991,
           4488116-4488398,4488494-4488689,4488913-4489254
          Length = 1721

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 459 LVYIFLQTF-AIPGSIFLSILSGFLFPFYFALVLVCC 566
           L+++ L+TF    G IF+    GF    YF LV++ C
Sbjct: 713 LIFLKLKTFYGTDGRIFIPGYKGFRCLKYFGLVMISC 749


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,646
Number of Sequences: 37544
Number of extensions: 253118
Number of successful extensions: 584
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)