Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n11
         (767 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D26067-1|BAA05062.1|  335|Homo sapiens KIAA0033 protein.              192   9e-49
BC091524-1|AAH91524.1|  291|Homo sapiens transmembrane protein 4...   192   9e-49
BC019884-1|AAH19884.1|  264|Homo sapiens transmembrane protein 4...   115   2e-25
BC008043-1|AAH08043.1|  264|Homo sapiens transmembrane protein 4...   115   2e-25
AY358547-1|AAQ88911.1|  264|Homo sapiens RPLL168 protein.             115   2e-25
BC044597-1|AAH44597.1|  192|Homo sapiens TMEM41B protein protein.      49   2e-05
BC035034-1|AAH35034.1|  192|Homo sapiens TMEM41B protein protein.      49   2e-05
AK172748-1|BAD18735.1|  132|Homo sapiens protein ( Homo sapiens ...    33   0.85 

>D26067-1|BAA05062.1|  335|Homo sapiens KIAA0033 protein.
          Length = 335

 Score =  192 bits (469), Expect = 9e-49
 Identities = 84/150 (56%), Positives = 111/150 (74%)
 Frame = +3

Query: 318 YRQFPXXXXXXXXXXXXPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPG 497
           Y+ FP            P D++DAK LG VL +YKD ++ +VL   F  YIFLQTFAIPG
Sbjct: 116 YKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPG 175

Query: 498 SIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVA 677
           SIFLSILSGFL+PF  AL LVC CS +GAS C+ LS L+G+ +V K+  E+A +WS+ V 
Sbjct: 176 SIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVE 235

Query: 678 KHKDNLLNYIVFLRVTPFLPNWFINMSAPV 767
           +H+++L+NYI+FLR+TPFLPNWFIN+++PV
Sbjct: 236 RHREHLINYIIFLRITPFLPNWFINITSPV 265


>BC091524-1|AAH91524.1|  291|Homo sapiens transmembrane protein 41B
           protein.
          Length = 291

 Score =  192 bits (469), Expect = 9e-49
 Identities = 84/150 (56%), Positives = 111/150 (74%)
 Frame = +3

Query: 318 YRQFPXXXXXXXXXXXXPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPG 497
           Y+ FP            P D++DAK LG VL +YKD ++ +VL   F  YIFLQTFAIPG
Sbjct: 72  YKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFLQTFAIPG 131

Query: 498 SIFLSILSGFLFPFYFALVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVA 677
           SIFLSILSGFL+PF  AL LVC CS +GAS C+ LS L+G+ +V K+  E+A +WS+ V 
Sbjct: 132 SIFLSILSGFLYPFPLALFLVCLCSGLGASFCYMLSYLVGRPVVYKYLTEKAVKWSQQVE 191

Query: 678 KHKDNLLNYIVFLRVTPFLPNWFINMSAPV 767
           +H+++L+NYI+FLR+TPFLPNWFIN+++PV
Sbjct: 192 RHREHLINYIIFLRITPFLPNWFINITSPV 221


>BC019884-1|AAH19884.1|  264|Homo sapiens transmembrane protein 41A
           protein.
          Length = 264

 Score =  115 bits (276), Expect = 2e-25
 Identities = 51/133 (38%), Positives = 87/133 (65%)
 Frame = +3

Query: 369 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 548
           P DL + ++L  VL  Y+  +   V       Y++ Q FAIPGS FL++L+G LF  +  
Sbjct: 45  PSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLG 104

Query: 549 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 728
           L+L C  +++GA+ C+ LS++ GK+LV  +FP++ A   + V +++++L  +++FLR+ P
Sbjct: 105 LLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFP 164

Query: 729 FLPNWFINMSAPV 767
             PNWF+N+SAP+
Sbjct: 165 MTPNWFLNLSAPI 177


>BC008043-1|AAH08043.1|  264|Homo sapiens transmembrane protein 41A
           protein.
          Length = 264

 Score =  115 bits (276), Expect = 2e-25
 Identities = 51/133 (38%), Positives = 87/133 (65%)
 Frame = +3

Query: 369 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 548
           P DL + ++L  VL  Y+  +   V       Y++ Q FAIPGS FL++L+G LF  +  
Sbjct: 45  PSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLG 104

Query: 549 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 728
           L+L C  +++GA+ C+ LS++ GK+LV  +FP++ A   + V +++++L  +++FLR+ P
Sbjct: 105 LLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFP 164

Query: 729 FLPNWFINMSAPV 767
             PNWF+N+SAP+
Sbjct: 165 MTPNWFLNLSAPI 177


>AY358547-1|AAQ88911.1|  264|Homo sapiens RPLL168 protein.
          Length = 264

 Score =  115 bits (276), Expect = 2e-25
 Identities = 51/133 (38%), Positives = 87/133 (65%)
 Frame = +3

Query: 369 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFLSILSGFLFPFYFA 548
           P DL + ++L  VL  Y+  +   V       Y++ Q FAIPGS FL++L+G LF  +  
Sbjct: 45  PSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFLNVLAGALFGPWLG 104

Query: 549 LVLVCCCSAIGASLCFFLSNLLGKKLVRKFFPERAAEWSKAVAKHKDNLLNYIVFLRVTP 728
           L+L C  +++GA+ C+ LS++ GK+LV  +FP++ A   + V +++++L  +++FLR+ P
Sbjct: 105 LLLCCVLTSVGATCCYLLSSIFGKQLVVSYFPDKVALLQRKVEENRNSLFFFLLFLRLFP 164

Query: 729 FLPNWFINMSAPV 767
             PNWF+N+SAP+
Sbjct: 165 MTPNWFLNLSAPI 177


>BC044597-1|AAH44597.1|  192|Homo sapiens TMEM41B protein protein.
          Length = 192

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +3

Query: 318 YRQFPXXXXXXXXXXXXPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQ 479
           Y+ FP            P D++DAK LG VL +YKD ++ +VL   F  YIF Q
Sbjct: 72  YKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFYQ 125



 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = +2

Query: 476 ANICNTWIYIFKYTFRVSFSFLFRTGISLLLFGNWCKSMFLLVKSSWKEAC*KILPRKSS 655
           ANIC + +YI +YT RVS S        L +F  WC  +      SW+ +C +I  R+SS
Sbjct: 127 ANICYSRLYISQYTLRVSLSLSTSLISCLFVFWTWCLFLLYAFLFSWETSCIQIPNRESS 186

Query: 656 RVV 664
           ++V
Sbjct: 187 KMV 189


>BC035034-1|AAH35034.1|  192|Homo sapiens TMEM41B protein protein.
          Length = 192

 Score = 49.2 bits (112), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +3

Query: 318 YRQFPXXXXXXXXXXXXPWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQ 479
           Y+ FP            P D++DAK LG VL +YKD ++ +VL   F  YIF Q
Sbjct: 72  YKNFPQLSEEERVNMKVPRDMDDAKALGKVLSKYKDTFYVQVLVAYFATYIFYQ 125



 Score = 48.0 bits (109), Expect = 4e-05
 Identities = 24/63 (38%), Positives = 35/63 (55%)
 Frame = +2

Query: 476 ANICNTWIYIFKYTFRVSFSFLFRTGISLLLFGNWCKSMFLLVKSSWKEAC*KILPRKSS 655
           ANIC + +YI +YT RVS S        L +F  WC  +      SW+ +C +I  R+SS
Sbjct: 127 ANICYSRLYISQYTLRVSLSLSTSLISCLFVFWTWCLFLLYAFLFSWETSCIQIPNRESS 186

Query: 656 RVV 664
           ++V
Sbjct: 187 KMV 189


>AK172748-1|BAD18735.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23909 fis, clone ADSU01856. ).
          Length = 132

 Score = 33.5 bits (73), Expect = 0.85
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +3

Query: 369 PWDLEDAKQLGLVLDRYKDRYFYEVLFGVFLVYIFLQTFAIPGSIFL 509
           P DL + ++L  VL  Y+  +   V       Y++ Q FAIPGS FL
Sbjct: 45  PSDLAELRELSEVLREYRKEHQAYVFLLFCGAYLYKQGFAIPGSSFL 91


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,215,004
Number of Sequences: 237096
Number of extensions: 1562808
Number of successful extensions: 6526
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6524
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)