Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n06
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.77 
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   4.1  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   7.2  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   7.2  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    25   9.5  

>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 497 DDICDRLRLRNTTGLDEEVNNVQSLVAKVVAWKFPLQTII 616
           ++ICD L    +   + +VN+V+ + A++  WK  L + +
Sbjct: 458 NEICDSLYWNPSPSFESQVNSVRRIYARLELWKSDLHSSV 497


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +2

Query: 479  VNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAK 580
            V F+YG+D  D  + ++ T  +    N +SL+ K
Sbjct: 1059 VQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQK 1092


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +2

Query: 539 LDEEVNNVQSLVAKVVAWKFPLQTIIPAIMVIFVG 643
           L E ++     +A++   K PL T+I A++ I +G
Sbjct: 5   LGERISTSVGFLAELFLMKIPLFTVIVALLTIILG 39


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = -1

Query: 502 IVAVIKIDSASLFQVHTLYRQT*NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFF 338
           +VA+I+  +A    + T + Q  + +      K  F C  SKY+ YLF +   F+
Sbjct: 129 LVAIIQSTTAIQAGILTAWYQLYSCKKEESSNK--FLCPLSKYLIYLFLSIHLFY 181


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 401 RVLLSFLEVRILFVSKLFSIFLSMFRRR 318
           R  LSFL +  LF+S L  IF + F+ +
Sbjct: 87  RAFLSFLSICFLFISFLNFIFSTRFQNK 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,196
Number of Sequences: 5004
Number of extensions: 57731
Number of successful extensions: 133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)