Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n06
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0291 - 29020032-29020660,29020747-29020817,29021020-290211...    28   9.9  
01_06_1684 + 39151412-39151702,39152410-39152548,39152926-391530...    28   9.9  

>05_07_0291 -
           29020032-29020660,29020747-29020817,29021020-29021194,
           29021451-29021571,29021686-29022036
          Length = 448

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 647 WSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQE 751
           W D ++KR +    P + E++S+T ++ +   FQ+
Sbjct: 170 WWDMWRKRTLPFTRPHLLELISSTDVIISNVVFQD 204


>01_06_1684 +
           39151412-39151702,39152410-39152548,39152926-39153040,
           39153232-39153332,39153688-39153809,39153885-39153976,
           39155288-39155393,39155477-39155631,39155904-39156031,
           39156349-39156479,39157171-39157268,39157371-39158162,
           39158472-39158523
          Length = 773

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 206 NVIKNIYFTHNTASAAPASPALDYTVNP*LFDC 108
           ++IK     H  A AA   P LD+  NP +F C
Sbjct: 239 DLIKEAVLFHPFAEAAYTGPLLDFGRNPFMFPC 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,663,441
Number of Sequences: 37544
Number of extensions: 347239
Number of successful extensions: 726
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)