Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n06
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    42   5e-04
AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical ...    34   0.10 
Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell death-re...    31   1.3  
AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homo...    31   1.3  
AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical...    30   2.2  
AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical...    30   2.2  
AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical ...    29   5.1  
AL110500-2|CAB60427.2|  281|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 33/127 (25%), Positives = 65/127 (51%), Gaps = 1/127 (0%)
 Frame = +2

Query: 365 IKYVLRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLD 544
           I+Y LR   +E  LF+YM+ + ++    Q++  EK C + +   +  C     RN +   
Sbjct: 2   IRY-LRMLGMEIPLFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFC-----RNVSAYY 55

Query: 545 EEVNNVQSLVAKVVAWKFPLQTIIPAIM-VIFVGAWSDKYKKRKICIVFPFIGEILSNTG 721
           ++  ++Q+  A    +   L  + P+++  + +GA +D Y   KI ++ P+IG IL    
Sbjct: 56  DD-KDIQA-AANHFYFISSLTLLCPSLVTTLLLGAATD-YWSIKIPLIIPYIGCILGTIN 112

Query: 722 LLFATYY 742
            +F +Y+
Sbjct: 113 YVFQSYF 119


>AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical
           protein Y43F8A.5 protein.
          Length = 475

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 26/113 (23%), Positives = 51/113 (45%)
 Frame = +2

Query: 404 LFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKV 583
           +F+Y + +S+     QS+   KAC +  +   +     + + T   D  V+++ S++   
Sbjct: 7   IFLYALTSSVFFPVFQSLIFYKAC-ITLSNSTEPEIACKSKETYARDNSVHSMSSVILMA 65

Query: 584 VAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYY 742
            +    +     +    +VG  SD  K RK+  + PFIG  +S+  +L    Y
Sbjct: 66  SSTGLCVSAFFTSR---WVGHLSD-VKSRKLAFLIPFIGLFISDFTILIQVLY 114


>Z27078-9|CAA81586.2|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 433 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 326
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>Z27078-4|CAB76843.1|  373|Caenorhabditis elegans Hypothetical
           protein K04H4.6a protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 433 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 326
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>Z19153-8|CAD45582.1|  378|Caenorhabditis elegans Hypothetical
           protein K04H4.6b protein.
          Length = 378

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 433 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 326
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>AY303580-1|AAP57302.1|  373|Caenorhabditis elegans cell
           death-related nuclease 6 protein.
          Length = 373

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 433 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 326
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 322 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 357


>AF220525-1|AAF43008.1|  352|Caenorhabditis elegans DNAse II homolog
           K04H4.6 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -1

Query: 433 NRRAHHVHKKAGFYCRFSKYVFYLFQNYFRFFSPCS 326
           NR++H +H+  G  C + +  ++ F N      PC+
Sbjct: 305 NRQSHQIHRGGGTMCIYDQETYFQFANIISETVPCT 340


>AF003151-11|AAO61426.1|  402|Caenorhabditis elegans Hypothetical
           protein D1007.5b protein.
          Length = 402

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 396 NPAFLCT*CARLFQVWRYKVCTWKRLAESILITATIS 506
           NP FL   C  L   WR  VC WK + E   + ATIS
Sbjct: 88  NPYFLS--CVGLLLGWRVTVCFWKTITE---VIATIS 119


>AF003151-10|AAK18913.2|  477|Caenorhabditis elegans Hypothetical
           protein D1007.5a protein.
          Length = 477

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 396 NPAFLCT*CARLFQVWRYKVCTWKRLAESILITATIS 506
           NP FL   C  L   WR  VC WK + E   + ATIS
Sbjct: 88  NPYFLS--CVGLLLGWRVTVCFWKTITE---VIATIS 119


>AF003144-2|AAB54193.2|  217|Caenorhabditis elegans Hypothetical
           protein C55C2.3 protein.
          Length = 217

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 301 YTAHRNLRRNMERKIENNFET-NKIRTSRNDSRTLPFYVHD 420
           YT H +L R +E K  N F+   K+  ++N+S     Y +D
Sbjct: 75  YTIHFHLARQLEEKYMNKFKKYKKLALNKNNSERESGYTYD 115


>AL110500-2|CAB60427.2|  281|Caenorhabditis elegans Hypothetical
           protein Y87G2A.2 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 406 FYVHDVHVYFKSGGTKYAP 462
           FYVH VH YF  GG +  P
Sbjct: 50  FYVHAVHCYFIRGGEESIP 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,407,218
Number of Sequences: 27780
Number of extensions: 322798
Number of successful extensions: 901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)