Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n03
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    26   2.5  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   3.3  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   5.7  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 282 KYELHIDIICYFLSIKKKFMFKL 350
           ++ LH+D  C+F S+  +F  +L
Sbjct: 277 RFLLHVDFDCFFASVSTRFSHEL 299


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 252 LINCFLEIIFKYELHID 302
           +INCF+++++   LH+D
Sbjct: 526 IINCFVKVLYYMPLHLD 542


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 279 FKYELHIDIICYFLSIKKKFMFKLIIENTNKTTFSE 386
           FKY   +  + Y LS K+K     + +N  K TF+E
Sbjct: 803 FKYHTDLKNLLYPLSEKEKIEGDELYDNILKETFNE 838


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,452
Number of Sequences: 5004
Number of extensions: 27371
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)