Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n03
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1004 + 29621209-29621590,29622615-29622827,29622974-296233...    27   4.1  
10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657     27   7.2  

>03_05_1004 +
           29621209-29621590,29622615-29622827,29622974-29623337,
           29623751-29624573
          Length = 593

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -2

Query: 254 QQQKMSSSSVCLNTKSLNVYKLFPSTKKHAVMKFSKATPEF 132
           Q Q   S S+  +  + N   LFP +K+H   + S + P+F
Sbjct: 331 QVQDSDSLSMLTSISTRNTGSLFPFSKQHNPFEVSNSRPDF 371


>10_08_0040 + 14360543-14361778,14361787-14362782,14362791-14363657
          Length = 1032

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 218 NTKSLNVYKLFPSTKKHAVMKFSKATP 138
           +T  + V   FP+T  HAV  FS ATP
Sbjct: 406 STTMVQVNMAFPTTDTHAVNIFSFATP 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,034,523
Number of Sequences: 37544
Number of extensions: 124241
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)