Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n03
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC006717-2|AAK84582.1|  136|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical pr...    26   8.7  
Z74472-3|CAA98941.2|  183|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical
           protein T27E7.8 protein.
          Length = 343

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +2

Query: 47  VFFFTCC-YYLCIFLAYNV 100
           VFF TCC YYL IF   NV
Sbjct: 226 VFFSTCCVYYLIIFKYSNV 244


>AC006717-2|AAK84582.1|  136|Caenorhabditis elegans Hypothetical
           protein Y14H12A.1 protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 12  FSRPHMAYVASQFFFLLVVIICVSF*LIMCIVC 110
           ++ P    +   FF  ++V ICV F LI CI+C
Sbjct: 34  YTSPSSIMMIMAFFLAILVSICVIFSLI-CIMC 65


>Z82051-9|CAB04820.1|  350|Caenorhabditis elegans Hypothetical
           protein T23D5.12 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   FVLFSRPHMAYVASQFFFLLVVIICVSF*LIMCIV 107
           FV F+ PH++ V+++   + +V  C  +   +C +
Sbjct: 75  FVFFTEPHLSLVSNEIMKIGLVFFCGIYGSTICFI 109


>Z82051-7|CAB04819.1|  364|Caenorhabditis elegans Hypothetical
           protein T23D5.10 protein.
          Length = 364

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +3

Query: 3   FVLFSRPHMAYVASQFFFLLVVIICVSF*LIMCIV 107
           FV F+ PH++ V+++   + +V  C  +   +C +
Sbjct: 89  FVFFTEPHLSLVSNEIMKIGLVFFCGIYGSTICFI 123


>Z74472-3|CAA98941.2|  183|Caenorhabditis elegans Hypothetical
           protein F23H12.3 protein.
          Length = 183

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 276 IFKYELHIDIICYFLSIKKKFMFKLIIE 359
           + K+ L I+   YFL++ K +MFK + E
Sbjct: 145 LVKFVLDINRDLYFLNMSKSYMFKSMFE 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,175,896
Number of Sequences: 27780
Number of extensions: 153639
Number of successful extensions: 390
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)