Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n02
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    29   0.69 
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    29   0.91 
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|...    27   2.8  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  

>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = +2

Query: 20  IPNLKIITFATCLIHLKIFSSPI*S-TINVTIFTPIRYI*HGQRRLHQNLLFKITRKFIL 196
           +PNL  ++  TCLI     ++PI + T N+++   + Y  HG   L      K+T   +L
Sbjct: 421 LPNLDGLS-VTCLIRQYDHNTPILAITSNISMNDAVTYFNHGVTDLLVKPFTKLTLLQLL 479

Query: 197 HNKLMNQLDQHLCVIKKLILNTAQISFGM*PVSY 298
             +L+N L     +    + +T +      PV++
Sbjct: 480 KKQLLNLLQADNSINMSDVPSTKEAKDDKAPVTF 513


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -1

Query: 486 PYTFKHHTFS*K-RFRNPKITFEFYIVVFDGHLLSFQY-SFLYK*CSF 349
           P++  +  FS    + +P    E+  +V+ GHL +F+Y   L K CSF
Sbjct: 248 PFSLDYRPFSPLLAWSSPLANVEYLALVYPGHLFAFRYDKSLGKFCSF 295


>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +1

Query: 178 NKKIYPPQQIDEPTR--PAFVCHQKTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKK 351
           N++  P   +  PT     FV H + + +    +   +   I+    DE LKQL    KK
Sbjct: 3   NQQSQPEFVLRAPTEFSEKFVRHLQESTETDTSRYMDMENYIQKRVQDE-LKQLQLRQKK 61

Query: 352 GALFVKEAVLEAQEMAIKDHNVEFKSNLWVAE 447
               ++E   ++    IKD      SNL  AE
Sbjct: 62  AIDAIQEEEWKSNAKTIKDSQGSLDSNLLSAE 93


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = -1

Query: 336 T*LF*CFINSHSSYETGYIPKLIWAVFNISFLMTHKCWSSWFINLLWRINFLVILNKRFW 157
           T +F CF  S      GY   L +A F+   L+       +    LW +  L+  N  FW
Sbjct: 168 TVIFYCFSPSGIYMSVGYTESL-FAAFSFLGLLLFIKKQQYPAAFLWSLATLIRSNGIFW 226

Query: 156 C 154
           C
Sbjct: 227 C 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,011
Number of Sequences: 5004
Number of extensions: 62991
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)