Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n02
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0708 + 24477228-24477375,24477823-24477905,24478233-244783...    64   1e-10
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365...    30   1.7  
01_06_0509 - 29921224-29924589                                         29   2.9  
01_01_0451 + 3355782-3355823,3356410-3357222                           29   2.9  
06_03_1221 - 28514952-28518152                                         28   6.7  
04_04_0106 + 22823781-22823878,22824887-22825325,22825578-228257...    28   6.7  
04_03_0930 - 20891334-20891511,20891958-20892109,20892737-208931...    28   6.7  
07_01_0978 + 8262778-8262859,8262931-8263505                           28   8.8  

>01_05_0708 +
           24477228-24477375,24477823-24477905,24478233-24478391,
           24478882-24478992,24479098-24479164,24479269-24479537
          Length = 278

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 36/89 (40%), Positives = 52/89 (58%)
 Frame = +1

Query: 244 KTNIKYSPDKLWYVACLIRGMTVDEALKQLSFVNKKGALFVKEAVLEAQEMAIKDHNVEF 423
           K +IK SP K+  VA L+RGM V++AL QL    K+ A  V + +  A+  A  +H ++ 
Sbjct: 125 KKDIKQSPKKVNLVAKLVRGMRVEDALLQLQVTVKRAAKTVYQVIHSARANAAHNHGLD- 183

Query: 424 KSNLWVAESFSGKGMVFKGIRRHARGRLG 510
              L V E+F GKG+  K +  HA+GR G
Sbjct: 184 PDKLIVEEAFVGKGLYLKRLSYHAKGRCG 212


>05_01_0462 -
           3658153-3658290,3658394-3658540,3658622-3658720,
           3658802-3659253,3659597-3660280,3662072-3662180
          Length = 542

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 154 APKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSP 267
           AP+S  +NN + YPP      + P  V H+     Y P
Sbjct: 309 APRSAHRNNLRTYPPPAFASSSNPGAVSHEPAIPSYPP 346


>01_06_0509 - 29921224-29924589
          Length = 1121

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 508  GEVRYKYSHYFVRLEEGKPPTDYYKRKPLLPSNQLQDWLEQMRRRKITNSY 660
            G+V Y Y    + L  GKPPTD          N L  W++Q  + KIT+ +
Sbjct: 991  GDV-YSYGVVLLELLTGKPPTD---SADFGEDNNLVGWVKQHTKLKITDVF 1037


>01_01_0451 + 3355782-3355823,3356410-3357222
          Length = 284

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +1

Query: 109 NFHTNSLHLAWTKATAPKSFIQNNKKIYPPQQIDEPTRPAFVCHQKTNIKYSPDK 273
           NF  NS        +AP   + N     P  + DE   P F+      + Y PDK
Sbjct: 140 NFADNSTDANSGCTSAPSLMMSNGPATIPSDEKDELESPPFIVANGPAVLYQPDK 194


>06_03_1221 - 28514952-28518152
          Length = 1066

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
 Frame = +1

Query: 556 GKPPTDYYKRKPL----LPSNQLQDWLEQMRRRKITN 654
           G+ P D +  KPL    LPSNQ++  L+  R  K+TN
Sbjct: 241 GELPGDIFDVKPLQRLQLPSNQIEGRLDPERIAKLTN 277


>04_04_0106 +
           22823781-22823878,22824887-22825325,22825578-22825729,
           22825828-22825999
          Length = 286

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 267 WAVFNISFLMTHKCWSSWFI 208
           WA+ +++ L    CWS WFI
Sbjct: 104 WAIGSVALLGGSACWSLWFI 123


>04_03_0930 -
           20891334-20891511,20891958-20892109,20892737-20893169,
           20893592-20893708,20894099-20894196
          Length = 325

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 267 WAVFNISFLMTHKCWSSWFI 208
           WA+ +++ L    CWS WFI
Sbjct: 141 WAIGSVALLGGSACWSLWFI 160


>07_01_0978 + 8262778-8262859,8262931-8263505
          Length = 218

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 18/66 (27%), Positives = 24/66 (36%)
 Frame = +1

Query: 379 LEAQEMAIKDHNVEFKSNLWVAESFSGKGMVFKGIRRHARGRLGEVRYKYSHYFVRLEEG 558
           LE  E A+  H + F  ++       G+  V    RR  R R+GE         V     
Sbjct: 56  LEGHEAAVACHGLVFLQDVRCDARHEGRQAVLHQRRRGGRRRVGEGEAAVGFVVVMFSSS 115

Query: 559 KPPTDY 576
              TDY
Sbjct: 116 MEETDY 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,480,007
Number of Sequences: 37544
Number of extensions: 350011
Number of successful extensions: 767
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)