Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3n02
         (735 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    26   1.4  
AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription fact...    23   9.8  
AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeo...    23   9.8  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 534 VTILIAHLTQSASCMSPYTFKH 469
           ++I+  +LT   S +SP+TF H
Sbjct: 538 ISIVAGYLTDEVSGLSPFTFMH 559


>AF269154-1|AAF91399.1|   76|Anopheles gambiae transcription factor
           proboscipedia protein.
          Length = 76

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +1

Query: 640 RKITNSY*INVQQ*LEIDVNFYFNKYI 720
           R++  +Y  N Q  LE++  F+FNKY+
Sbjct: 25  RRLRTAY-TNTQL-LELEKEFHFNKYL 49


>AF080565-1|AAC31945.1|  324|Anopheles gambiae Antennapedia homeotic
           protein protein.
          Length = 324

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 610 LQDWLE-QMRRRKITNSY*INVQQ*LEIDVNFYFNKYI 720
           L  W+  Q  R++   +Y     Q LE++  F+FN+Y+
Sbjct: 234 LYPWMRSQFERKRGRQTY--TRYQTLELEKEFHFNRYL 269


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,209
Number of Sequences: 2352
Number of extensions: 14709
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 75260343
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)