Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m24
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces pom...   126   4e-30
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    30   0.36 
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    26   5.9  
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    25   7.8  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   7.8  
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc...    25   7.8  

>SPCC18.16c |fmn1||riboflavin kinase Fmn1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 163

 Score =  126 bits (303), Expect = 4e-30
 Identities = 61/146 (41%), Positives = 90/146 (61%)
 Frame = +1

Query: 118 KMSSVLPFFLEGEVVKGFGRGSKELGCPTANYPLEVVKSLPKGLEPGVYYGWAQVDTGPV 297
           K+ S  P   EG+VV GFGRGSKELG PTAN   + ++ L +  + GVY+G+A V    V
Sbjct: 17  KVQSPYPIRFEGKVVHGFGRGSKELGIPTANISEDAIQELLRYRDSGVYFGYAMVQKR-V 75

Query: 298 YEMVANIGWCPFYQNKEMSVETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQ 477
           + MV ++GW P+Y+NK  S E H++     DFY   +++ ++GY+R E N+  LD LIE 
Sbjct: 76  FPMVMSVGWNPYYKNKLRSAEVHLIERQGEDFYEEIMRVIVLGYIRPELNYAGLDKLIED 135

Query: 478 IREDIKNSEQNLKQPSAQSLRNHSFF 555
           I  DI+ +  ++ +PS  S +   FF
Sbjct: 136 IHTDIRVALNSMDRPSYSSYKKDPFF 161


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -1

Query: 421 LEQFLN*NHRNHPGNCALYGFQQTSLYFGKKDTILYLLPSHIQVLCQLEPIHNKHLAPNL 242
           L+ + N  HR     CAL  F++T +  G+ D +L + P HI+   Q+       L   +
Sbjct: 631 LKFYFNLLHRKVRNGCALLHFKETEILEGEWDFLLAVCP-HIEHGFQIMSKSLSSLVGEI 689

Query: 241 LVKILQLPKD 212
           L  I +  KD
Sbjct: 690 LTNINRYLKD 699


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 361 FQQTSLYFGKKDTILYLLPSHIQVLC 284
           FQ  + +F KK+ ++  +  H Q+LC
Sbjct: 142 FQANTYFFKKKEDLIPFIEEHWQLLC 167


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 358  ETHIMHNFQGDFYGSNLKIALIGYLRGEKNFNCLDALIEQI 480
            ETHI H  +  + G   KI ++ Y  G    N     +E +
Sbjct: 1081 ETHIQHFIKKFYAGDEKKIPIVEYFGGVPPVNVSHKSLESV 1121


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 315 ICYHLIYRSCVNLSPSIINTWLQTFW*RFYNFQRIISCWAS 193
           +C+ L+YR+  +    ++  +L   +   + F R+ SC++S
Sbjct: 59  LCFFLVYRTTYSFGVCLMKRFLFNKFFNRHPFTRVKSCFSS 99


>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 364 HIMHNFQGDFYGSNLKIALIGYLRGEKNF 450
           H+M   +GD+    L++A  G+L G+ +F
Sbjct: 277 HLMIPTKGDYVRQTLELAGFGFLPGDASF 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,773,893
Number of Sequences: 5004
Number of extensions: 59512
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)