Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m22
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       33   0.041
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    29   0.66 
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    29   0.66 
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    28   1.5  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    26   6.1  
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy...    25   8.1  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   8.1  

>SPBC14C8.08c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 33.1 bits (72), Expect = 0.041
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
 Frame = +3

Query: 318 VKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQE--AR 491
           ++ +  K K  NL R+T++   +H++     S +I +    SR  M    +S LQE   +
Sbjct: 61  IRQITAKDKTVNLLRKTLNRPLLHEVDYHGKSLEILDMLLQSRNSMISSLRSELQEKNQK 120

Query: 492 DERNQQRQLEPSNGINRDSGVN 557
           D++ +  +LE      ++  VN
Sbjct: 121 DKKKEVNKLEEKMTNAKEPNVN 142


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +3

Query: 330 PKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQ 509
           P     +  S ++ H R   D R    SE  +  +A   +R   +RK R+ +  D   Q+
Sbjct: 125 PLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDGLRDRHIRKVRVSQLLD--LQR 182

Query: 510 RQLEPSNGINRD 545
           R++ P++   +D
Sbjct: 183 RRIRPADHTTKD 194


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 17/44 (38%), Positives = 27/44 (61%)
 Frame = +3

Query: 477 LQEARDERNQQRQLEPSNGINRDSGVNGDKPVEDVQSTCSTEST 608
           L+ AR++  + RQLE ++G   D G   D+  E+V S+ +T ST
Sbjct: 454 LERARNDAEKIRQLEKASGNASDEGELNDE--EEVISSSNTPST 495


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/34 (44%), Positives = 27/34 (79%), Gaps = 4/34 (11%)
 Frame = +3

Query: 432 NADSRVRMSQLRKSRLQE-ARD---ERNQQRQLE 521
           +A + V++ QLRK++++E AR+   ERN+QR+L+
Sbjct: 18  SAQAAVQIEQLRKAQIREKAREITEERNRQRKLQ 51


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 417 QIQENNADSRVRMSQLRKSRLQEARDERNQQR 512
           QI+ENN   RV + +LRK  +  A   R   R
Sbjct: 634 QIRENNGYKRVLLDRLRKKAILRAFPSRTLNR 665


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 297 KYTYFIIVKAMPKKRKGANLSRRTIHARAMHD--IRARRSSEQIQENNADS 443
           K  Y  +    P+ +     SRR   A+  HD  ++A R+ E   E   DS
Sbjct: 79  KLLYMAVDGCAPRAKMNQQRSRRFRTAKDAHDARLKAERNGEDFPEEQFDS 129


>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 435

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 538 FIPFDGSSCLC*FRSSRASCNRDLRNCDILTRESALFS*ICSLDL 404
           F  F+G+ C    R    SC   LR+   +  +  +FS I  +DL
Sbjct: 178 FDEFNGTDCFQLTRCGHVSCQSCLRDYYTMCIQEGMFSQIKCIDL 222


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 408 SSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSGVNG 560
           ++E++++NNA+S        +  ++   D +      +PS     D G NG
Sbjct: 499 TNEEVEKNNANSENANGLTDEKIIEAPLDTKENSDDDKPSPAAAEDIGTNG 549


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,569,713
Number of Sequences: 5004
Number of extensions: 46383
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)