Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m22
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 33 0.17
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047... 29 4.8
05_03_0287 - 11639070-11639663 29 4.8
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 28 6.4
08_02_0317 + 15705184-15705391,15706194-15706270,15706364-157064... 28 6.4
03_05_0125 - 21039767-21039791,21039876-21039922,21040220-210405... 28 6.4
01_07_0031 - 40603243-40603491,40603617-40603799,40603896-406040... 28 6.4
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 28 8.5
02_05_0343 + 28132348-28132878,28133256-28133366,28133477-281335... 28 8.5
>06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Frame = +3
Query: 324 AMPKKRKGANLSRRTIHARAMHD---IRARRSSEQIQENNADSRVRMSQLRKSRLQEARD 494
A + R R+ I A+A + + A++ +E+++E+ + + Q+R+ + RD
Sbjct: 802 AAREARAAEQQRRKEIRAKAQQEEAELLAQKLAEKLRESEQRRKYYLEQIRERASMDFRD 861
Query: 495 ERNQ-QRQLEPSNGINRDSGVNGDKPVEDVQSTCSTES 605
+ + QR+ + NR S N + + + S + ES
Sbjct: 862 QPSPFQRRFPSKDNQNRSSSANSGEDSQIISSANAAES 899
>07_03_1530 +
27502546-27502671,27503487-27503561,27504670-27504746,
27505576-27507522,27508478-27508946,27509898-27510079,
27510746-27511208,27511295-27511691,27511810-27511937,
27512106-27512273,27512452-27512559,27512830-27512838
Length = 1382
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 399 ARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRD--SGVNGDKPV 572
+++S +Q+N + + ++ RK R D R + P N IN+ + ++ +K V
Sbjct: 224 SKKSQNDVQQNISCALGNLTSPRKLRSSLGADLRPTEDSCGPMNSINQPCVNVISDNKQV 283
Query: 573 EDVQSTC 593
Q TC
Sbjct: 284 HSFQHTC 290
>05_03_0287 - 11639070-11639663
Length = 197
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +3
Query: 291 VNKYTYFIIVKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLR 467
VN++ I+K +K +G+N + ++ A + R +E+ +E +A+ R+ ++ LR
Sbjct: 109 VNRHLSPPIIKEEARKFEGSNSPQPSVTKLAKRIKQLHRENEEHRERDAERRLEIADLR 167
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/67 (28%), Positives = 33/67 (49%)
Frame = +3
Query: 396 RARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSGVNGDKPVE 575
R+ +S+ I E++ D + + Q ++ ++ D+ L PS N D G+K V
Sbjct: 749 RSEKSTPGINESSEDHQHKTDQGTETAPKQVSDD------LSPSEKKNSDDQSPGEKKVS 802
Query: 576 DVQSTCS 596
D QST +
Sbjct: 803 DDQSTAN 809
>08_02_0317 +
15705184-15705391,15706194-15706270,15706364-15706406,
15706507-15706564,15707576-15707645,15708409-15708876
Length = 307
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/62 (25%), Positives = 31/62 (50%)
Frame = +3
Query: 408 SSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDSGVNGDKPVEDVQS 587
SSEQ+ ++ + + +S +Q A +N Q Q+EP+ + D + +P+ S
Sbjct: 188 SSEQLPDSEKTNPPTPVPISESPVQGAPHSKNSQSQVEPTKSPSHDDALPCGEPLTP-DS 246
Query: 588 TC 593
+C
Sbjct: 247 SC 248
>03_05_0125 -
21039767-21039791,21039876-21039922,21040220-21040533,
21040613-21040735,21041599-21041710
Length = 206
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/67 (23%), Positives = 31/67 (46%)
Frame = +3
Query: 327 MPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQ 506
M K KG + + ++H +A ++ E+ + +++ S+ + R RDER
Sbjct: 123 MYMKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKSKASRERKIARRDERLA 182
Query: 507 QRQLEPS 527
Q EP+
Sbjct: 183 QGPREPA 189
>01_07_0031 -
40603243-40603491,40603617-40603799,40603896-40604084,
40604244-40604916,40605583-40605737
Length = 482
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/24 (45%), Positives = 19/24 (79%)
Frame = +3
Query: 48 LIFLCNSHVNYTVIVKLSLIFSAI 119
++F CNSHV++ +++ S IFSA+
Sbjct: 52 IVFSCNSHVSFLILMN-STIFSAM 74
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Frame = +3
Query: 357 SRRTIHARAMHDI-RAR-RSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQL 518
SRR+ + HD+ R++ RSS++ + AD+R S +S+ + AR+ + + +L
Sbjct: 107 SRRSGSRTSGHDVSRSKSRSSDRTSSDRADTRDSRSSADQSKNRSAREAHDYRNEL 162
>02_05_0343 +
28132348-28132878,28133256-28133366,28133477-28133590,
28134077-28134367,28134447-28134557,28134658-28134711,
28135587-28135666,28135749-28135864,28136491-28136605,
28136740-28136788,28136984-28137106
Length = 564
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +3
Query: 399 ARRSSEQIQENNADSRVRMSQLRKSRLQEARDERNQQRQLEPSNGINRDS--GVN-GDKP 569
A S+ + + + + + QL+K + + E+ QRQ + + D N GD P
Sbjct: 13 AASSAGDLAADLSSATISKKQLKKDARKAEKAEKASQRQQQQQPQADADDPFAANYGDVP 72
Query: 570 VEDVQS 587
VE++QS
Sbjct: 73 VEEIQS 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,974,657
Number of Sequences: 37544
Number of extensions: 245439
Number of successful extensions: 567
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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