Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m22
         (713 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical p...    29   3.3  
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF125447-1|AAD12807.1|  414|Caenorhabditis elegans Hypothetical ...    29   3.3  

>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
           protein R02F2.2 protein.
          Length = 1182

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 25/88 (28%), Positives = 46/88 (52%)
 Frame = +3

Query: 324 AMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDERN 503
           A+P+ ++ A +S  T    + ++ R RRS   +  N  + R R  + R+S ++ +R ER+
Sbjct: 21  AVPRPKRSATVSPST--RNSFYNSR-RRSDANL--NFFNERERQRERRRSMVRASR-ERS 74

Query: 504 QQRQLEPSNGINRDSGVNGDKPVEDVQS 587
           + R+    N    +S  N D P  DV++
Sbjct: 75  ESRRASQQNLRKTNSEPNVDMPSIDVEA 102


>Z81542-6|CAE17834.1|  365|Caenorhabditis elegans Hypothetical
           protein F49A5.9 protein.
          Length = 365

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 255 PKKFKYNLSIYG--YGNGRCWRLFT 187
           P     N  ++G  Y NG+CWRLFT
Sbjct: 96  PAPSNINTCVFGFTYINGKCWRLFT 120


>Z70756-11|CAA94793.2|  368|Caenorhabditis elegans Hypothetical
           protein T06E4.7 protein.
          Length = 368

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 338 FFWHCFHNNKIGIFINHVYVFVLI*NNSQKNLSTI 234
           F W+C+  N I IF+N + +F+    +S K++ TI
Sbjct: 5   FSWYCYICNGIAIFLNGILLFL----SSHKSIETI 35


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +3

Query: 264 LNQNENVYVVNKYTYFIIVKAMPKKRKGANLSRRTIHARAMHDIRARRSSEQIQENNADS 443
           LNQN +V   N   YF+  + M +KR  A+LSR      +M     R ++  +     + 
Sbjct: 398 LNQNNDV-TANGTRYFVGAERMKRKRSKASLSRLRQQVASM-----RHATIDVSRRAFNW 451

Query: 444 RVRMSQLRKSRLQEARDER 500
              +  LR  R+ +  DER
Sbjct: 452 TRALRNLRGRRVAQRIDER 470


>AF125447-1|AAD12807.1|  414|Caenorhabditis elegans Hypothetical
           protein Y14H12B.2 protein.
          Length = 414

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 342 KGANLSRRTIHARA-MHDIRARRSSEQIQENNADSRVRMSQLRKSRLQEARDE 497
           K   L  +  HA+    D+  RRSS    ++ A S  ++ Q+  + LQE  DE
Sbjct: 124 KSTKLEFKGKHAKGNFADLSQRRSSSASNQSVAQSPPQLQQINSADLQEEEDE 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,171,207
Number of Sequences: 27780
Number of extensions: 259842
Number of successful extensions: 678
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)