Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m19
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1082 - 8847795-8848033,8848511-8848724                           28   6.1  
11_01_0788 + 6599962-6602700                                           27   8.0  
09_04_0348 - 16890842-16890925,16890942-16891019,16891079-168912...    27   8.0  

>06_01_1082 - 8847795-8848033,8848511-8848724
          Length = 150

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 264 ARDRVVYGGNSADSTR--EQWFFQPAKYENDVLFFIYNREFND 386
           A  +  Y G++A   R  + W      Y  DVL F YN+E++D
Sbjct: 39  AGGKTYYVGDAAGWGRNLDWWLAGKTFYAGDVLVFKYNKEYHD 81


>11_01_0788 + 6599962-6602700
          Length = 912

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 294 SADSTREQWFFQPAKYENDVLFFIYNREFNDA-LELDTIVNASGDRK 431
           +A   +E+W  QP    N  L +I  ++F D  L  D +V   G+RK
Sbjct: 131 NAGKRKERWLQQPDLIPNP-LTYIERKQFQDCLLAQDYLVGIEGNRK 176


>09_04_0348 -
           16890842-16890925,16890942-16891019,16891079-16891266,
           16891414-16891537
          Length = 157

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/58 (20%), Positives = 25/58 (43%)
 Frame = -2

Query: 445 SCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTR 272
           +CP      + +T+V  ++  LN       +   SY+  +   C  + +  +P +T R
Sbjct: 59  TCPLCRGEVKGYTLVEPAREQLNQNKRSCMQDGCSYMGSYGELCKHMEATFIPEFTAR 116


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,416
Number of Sequences: 37544
Number of extensions: 242045
Number of successful extensions: 715
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)