Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m19
(572 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF560717-1|ABQ59027.1| 983|Homo sapiens PHC3 protein protein. 32 1.6
BC131772-1|AAI31773.1| 983|Homo sapiens PHC3 protein protein. 32 1.6
AJ320486-1|CAC86587.2| 983|Homo sapiens homolog of polyhomeotic... 32 1.6
AF444193-1|AAM51781.1| 983|Homo sapiens polyhomeotic 3 protein ... 32 1.6
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 31 2.9
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 2.9
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 2.9
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 2.9
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 2.9
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 31 2.9
AF326592-1|AAL37371.1| 1171|Homo sapiens homeodomain interacting... 31 3.8
AF208291-1|AAG41236.1| 1198|Homo sapiens protein kinase HIPK2 pr... 31 3.8
AF207702-1|AAG35710.1| 911|Homo sapiens homeodomain-interacting... 31 3.8
AC005531-1|AAS00368.1| 292|Homo sapiens unknown protein. 31 3.8
>EF560717-1|ABQ59027.1| 983|Homo sapiens PHC3 protein protein.
Length = 983
Score = 31.9 bits (69), Expect = 1.6
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = -2
Query: 469 SGRPETSPSCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALL 290
SGRP TSP+ +S + T ++ S + ++L +++ S S +G +++L +
Sbjct: 105 SGRPSTSPTGSVTQQSSMSQTSINLSTSPTPAQLISRSQAS-SSTSGSITQQTMLLGSTS 163
Query: 289 PPYTTRSRALQLQVDVLIF 233
P T + L+ +LIF
Sbjct: 164 PTLTASQAQMYLRAQMLIF 182
>BC131772-1|AAI31773.1| 983|Homo sapiens PHC3 protein protein.
Length = 983
Score = 31.9 bits (69), Expect = 1.6
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = -2
Query: 469 SGRPETSPSCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALL 290
SGRP TSP+ +S + T ++ S + ++L +++ S S +G +++L +
Sbjct: 105 SGRPSTSPTGSVTQQSSMSQTSINLSTSPTPAQLISRSQAS-SSTSGSITQQTMLLGSTS 163
Query: 289 PPYTTRSRALQLQVDVLIF 233
P T + L+ +LIF
Sbjct: 164 PTLTASQAQMYLRAQMLIF 182
>AJ320486-1|CAC86587.2| 983|Homo sapiens homolog of polyhomeotic 3
protein.
Length = 983
Score = 31.9 bits (69), Expect = 1.6
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = -2
Query: 469 SGRPETSPSCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALL 290
SGRP TSP+ +S + T ++ S + ++L +++ S S +G +++L +
Sbjct: 105 SGRPSTSPTGSVTQQSSMSQTSINLSTSPTPAQLISRSQAS-SSTSGSITQQTMLLGSTS 163
Query: 289 PPYTTRSRALQLQVDVLIF 233
P T + L+ +LIF
Sbjct: 164 PTLTASQAQMYLRAQMLIF 182
>AF444193-1|AAM51781.1| 983|Homo sapiens polyhomeotic 3 protein
protein.
Length = 983
Score = 31.9 bits (69), Expect = 1.6
Identities = 21/79 (26%), Positives = 40/79 (50%)
Frame = -2
Query: 469 SGRPETSPSCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALL 290
SGRP TSP+ +S + T ++ S + ++L +++ S S +G +++L +
Sbjct: 105 SGRPSTSPTGSVTQQSSMSQTSINLSTSPTPAQLISRSQAS-SSTSGSITQQTMLLGSTS 163
Query: 289 PPYTTRSRALQLQVDVLIF 233
P T + L+ +LIF
Sbjct: 164 PTLTASQAQMYLRAQMLIF 182
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 57 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 236
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 237 MSTSTCNCNARDRVVYGGNSADSTREQW 320
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 57 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 236
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 237 MSTSTCNCNARDRVVYGGNSADSTREQW 320
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 57 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 236
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 237 MSTSTCNCNARDRVVYGGNSADSTREQW 320
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 57 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 236
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 237 MSTSTCNCNARDRVVYGGNSADSTREQW 320
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 57 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 236
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 237 MSTSTCNCNARDRVVYGGNSADSTREQW 320
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 31.1 bits (67), Expect = 2.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 57 RNYNLALKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFKAHNTKYNQYLK 236
++ ++ L NP+ + I Y + + + E +W T+ + ++ F +NT+ N ++
Sbjct: 4167 KSTSVELSWSEPVNPNGKIIRY-EVIRRCFEGKAWGNQTIQADEKIVFTEYNTERNTFMY 4225
Query: 237 MSTSTCNCNARDRVVYGGNSADSTREQW 320
T + +Y NSA T W
Sbjct: 4226 NDTGLQPWTQCEYKIYTWNSAGHTCSSW 4253
>AF326592-1|AAL37371.1| 1171|Homo sapiens homeodomain interacting
protein kinase 2 protein.
Length = 1171
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 445 SCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCS-LVLSALLPPYTTRS 269
SC T SP + + ++S S+ R N +F +NHC+ + ++PP T++
Sbjct: 890 SCVTVHDSPYSDSSSNTSPYSVQQRAGHNNANAFDTKGSLENHCTGNPRTIIVPPLKTQA 949
Query: 268 RALQLQVDVLI 236
+ ++ D L+
Sbjct: 950 SEVLVECDSLV 960
>AF208291-1|AAG41236.1| 1198|Homo sapiens protein kinase HIPK2
protein.
Length = 1198
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 445 SCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCS-LVLSALLPPYTTRS 269
SC T SP + + ++S S+ R N +F +NHC+ + ++PP T++
Sbjct: 917 SCVTVHDSPYSDSSSNTSPYSVQQRAGHNNANAFDTKGSLENHCTGNPRTIIVPPLKTQA 976
Query: 268 RALQLQVDVLI 236
+ ++ D L+
Sbjct: 977 SEVLVECDSLV 987
>AF207702-1|AAG35710.1| 911|Homo sapiens homeodomain-interacting
protein kinase 2 protein.
Length = 911
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 445 SCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCS-LVLSALLPPYTTRS 269
SC T SP + + ++S S+ R N +F +NHC+ + ++PP T++
Sbjct: 810 SCVTVHDSPYSDSSSNTSPYSVQQRAGHNNANAFDTKGSLENHCTGNPRTIIVPPLKTQA 869
Query: 268 RALQLQVDVLI 236
+ ++ D L+
Sbjct: 870 SEVLVECDSLV 880
>AC005531-1|AAS00368.1| 292|Homo sapiens unknown protein.
Length = 292
Score = 30.7 bits (66), Expect = 3.8
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = -2
Query: 445 SCPTALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCS-LVLSALLPPYTTRS 269
SC T SP + + ++S S+ R N +F +NHC+ + ++PP T++
Sbjct: 11 SCVTVHDSPYSDSSSNTSPYSVQQRAGHNNANAFDTKGSLENHCTGNPRTIIVPPLKTQA 70
Query: 268 RALQLQVDVLI 236
+ ++ D L+
Sbjct: 71 SEVLVECDSLV 81
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,443,920
Number of Sequences: 237096
Number of extensions: 1358156
Number of successful extensions: 2761
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2761
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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