Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m17
         (364 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    26   2.1  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     25   2.7  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    24   8.3  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 290  NK*FSIFIAKIRTFIIQNDIVPKILNTLSIGDQYELTRA 174
            NK FS ++  + +    N + PK +   SI +QYE   A
Sbjct: 1121 NKMFSAYMLTVASTSTMNGLQPKFIYFRSIYEQYEQNTA 1159


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 221 ILNTLSIGDQYELTRASK 168
           ++N L IG+QY L  ASK
Sbjct: 366 LMNALEIGEQYNLKSASK 383


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 23.8 bits (49), Expect = 8.3
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 218 LNTLSIGDQYELTRA-SKISQQPYHNFRYKNHNLNNYE 108
           +N++S+  Q     A     +QP HN RYK    ++Y+
Sbjct: 120 VNSMSVSPQSNFMYAICDHCEQPIHNVRYKCSVCDDYD 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,202,540
Number of Sequences: 5004
Number of extensions: 19291
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 112046990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)