Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m17
         (364 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1374 - 33028790-33028951,33029033-33029087,33029402-330294...    27   6.0  
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680...    26   7.9  

>04_04_1374 -
           33028790-33028951,33029033-33029087,33029402-33029466,
           33029558-33029701,33029825-33029878,33029971-33030220,
           33030340-33030446,33031206-33031216,33032682-33032796,
           33032897-33033005,33033088-33033203,33033288-33033647
          Length = 515

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 19  PSSA*CSTSLYFLICSCCGFSRCG 90
           P+ + C TS    IC  CGF  CG
Sbjct: 249 PTCSVCQTSGNLWICIICGFVGCG 272


>12_01_0752 -
           6798938-6799312,6799628-6799768,6800257-6800325,
           6800407-6800454,6801740-6801836,6801922-6802001,
           6802099-6802170,6802335-6802429,6802853-6802934,
           6805476-6805853
          Length = 478

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 200 GDQYELTRASKISQQPYHNFRYKNHNLNNY 111
           G  Y     +  + Q YHN ++ NH+ NN+
Sbjct: 379 GRGYHQHNNNHFNNQNYHNGQHHNHHANNH 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,906,894
Number of Sequences: 37544
Number of extensions: 99337
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)