Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m17
         (364 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid desa...    28   1.7  
AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical ...    28   1.7  
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    28   2.3  
Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine rece...    26   7.0  

>L41807-1|AAA67369.1|  402|Caenorhabditis elegans fatty acid
           desaturase protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 109 KLHNQ-VNHSD*SHNSYR*ESRDWCCIRHWKAW 14
           KLH+   NH D  H     + +DW  +  WK W
Sbjct: 160 KLHHAFTNHIDKDHGHVWIQDKDWEAMPSWKRW 192


>AL132951-8|CAC44309.1|  402|Caenorhabditis elegans Hypothetical
           protein Y67H2A.8 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = -1

Query: 109 KLHNQ-VNHSD*SHNSYR*ESRDWCCIRHWKAW 14
           KLH+   NH D  H     + +DW  +  WK W
Sbjct: 160 KLHHAFTNHIDKDHGHVWIQDKDWEAMPSWKRW 192


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 206 SIGDQYELTRASKISQQPYHNFRYKNHNLNN 114
           SIG++++  RA+K   Q Y N ++K+  L+N
Sbjct: 276 SIGERWDFDRAAKYFIQLYRNRKFKDSCLDN 306


>Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical
           protein ZC15.8 protein.
          Length = 109

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 221 ILNTLSIGDQYELTRASKISQQPYHNFRYKNHNLNNYETT 102
           ++ +L +   +   +  +  QQPY+N +Y N   N Y+TT
Sbjct: 5   LIASLLVASVFAQYQQQQYQQQPYNNQQYSN---NQYQTT 41


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 232 LSPKF*IPCLLETNMNSHEHQKFH 161
           L+P   IP ++ T  NSH+H + H
Sbjct: 196 LTPLIYIPVMIVTRKNSHQHSQQH 219


>U80028-7|AAG23984.1|  370|Caenorhabditis elegans Serpentine
           receptor, class w protein124 protein.
          Length = 370

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 275 IFIAKIRTFIIQNDIVPK 222
           +FIA IRT II+N + PK
Sbjct: 134 VFIALIRTLIIRNPLSPK 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,598,046
Number of Sequences: 27780
Number of extensions: 108552
Number of successful extensions: 280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)