Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m12
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    29   0.88 
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual    27   3.5  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   6.2  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    26   6.2  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   8.2  
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    25   8.2  

>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 245 YVMSEYCGRLSPSFILLFVSNAFNMPIL 162
           Y    +C    PSF+LL+V   F +P++
Sbjct: 133 YCFDVHCNSFFPSFVLLYVIQLFLLPVI 160


>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 394

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 399 GDGTAVMPRIRSIERSVGRILDSYWIPCWDTWQ 301
           GD T V+P +RS+ R+ G +   ++    D+W+
Sbjct: 184 GDHTIVLPILRSVSRAYGPVSIIHFDSHLDSWK 216


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = +1

Query: 637 YQIFEIDNRIDYELILFIYTMYSN 708
           Y +FE+++ + Y+L++F  T YSN
Sbjct: 102 YPVFEVNSNLYYQLLMF--TNYSN 123


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 6/83 (7%)
 Frame = +1

Query: 442 IKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRLKS----ALKSAYM*HQ 609
           I++     P  +P   P      T+ +    P P+ +P QPR++      + +       
Sbjct: 352 IQQATAAEPLATPPRHPLNATNGTSQSNISTPLPEPTPGQPRKVSGHNPPSARRLPSASS 411

Query: 610 VKFNRFL--STYQIFEIDNRIDY 672
           VKFN  L  ++ Q  + +N+  Y
Sbjct: 412 VKFNEKLKNASKQSIQNENKASY 434


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +1

Query: 415 GRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPR 567
           G P    +E+  +VP   +     D + +R  T   G P  +P+++P   R
Sbjct: 306 GYPVEIAKELGVSVPRMETLLALFDAKNKRNLTVRAGTPQSSPNFNPAMRR 356


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +2

Query: 305 HVSQHGIQ*ESRIRPTDRSIDLIRGITAVPSPIRHKVVVHSPTWRRSN 448
           H+ ++G++    I+P     ++ R +   P P   K++  S  WR  N
Sbjct: 430 HIEEYGMEEAYNIQPIINGNEITRILGIRPGPHLRKMLDDSIEWRIQN 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,066
Number of Sequences: 5004
Number of extensions: 71373
Number of successful extensions: 191
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)