Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m12
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0009 - 27015346-27015705,27016552-27016676,27016778-270168... 34 0.13
03_01_0415 + 3191392-3191952 33 0.17
07_01_0678 - 5103836-5104613,5104697-5104888,5104994-5105036,510... 31 1.2
09_06_0108 - 20912236-20912364,20912470-20912601,20912718-209130... 29 2.8
03_02_0642 + 10086400-10086505,10086675-10087014,10087072-100871... 29 2.8
01_06_0868 - 32587618-32587875,32588239-32588318,32588518-325885... 29 2.8
03_01_0658 + 4818401-4818540,4818605-4819201,4819694-4819949,482... 29 3.7
01_06_0747 - 31645136-31646521,31647870-31648142,31649080-316491... 29 3.7
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 29 4.9
11_02_0073 - 8020401-8020512,8020594-8020679,8020761-8020921,802... 29 4.9
10_08_1026 + 22400551-22401161,22401437-22401632,22401837-224018... 29 4.9
04_03_1017 + 21747044-21748051 29 4.9
03_03_0234 + 15669463-15669773,15669866-15670046,15670133-156702... 29 4.9
07_03_1378 + 26158233-26158562,26159075-26159176,26159551-261598... 28 6.4
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 28 6.4
02_01_0218 + 1433310-1435620,1435672-1435951,1436461-1436524,143... 28 6.4
09_04_0180 + 15367737-15367755,15368874-15369739 28 8.5
05_01_0493 + 4113869-4116728,4116859-4117370 28 8.5
01_05_0432 - 22087658-22087999 28 8.5
>05_07_0009 -
27015346-27015705,27016552-27016676,27016778-27016853,
27016923-27017105,27018000-27018077,27018159-27018239,
27018347-27018412,27018491-27018556,27019126-27019176,
27019286-27019378,27019498-27019625,27019713-27019851,
27021039-27021136,27021332-27021401,27021565-27021654
Length = 567
Score = 33.9 bits (74), Expect = 0.13
Identities = 47/180 (26%), Positives = 71/180 (39%), Gaps = 7/180 (3%)
Frame = +1
Query: 37 YLMTIVLKGY--VYHVINLVLIILL----AMYTLEYGSALQKNEHSIHKMGILNAFETNR 198
Y + +VLK +Y IN +I L+ M E AL+ + + G L+ F N
Sbjct: 219 YALALVLKESFKIYCAINDGIINLVDKFFEMPRHEALKALEIYRRAGQQAGSLSDFYENC 278
Query: 199 RINEGERRPQYSDMTYPPFVRSMQVNHGFNNDDELPR-IPTRDPIRIEXXXXXXXXXXXX 375
R E R Q+ + PP + + E PR +P R+P+ +
Sbjct: 279 RGLELARNFQFPTLREPPQTFLVTMEEYVR---EAPRMVPVREPLELPERLLLTYKPEE- 334
Query: 376 WHHSRSVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSP 555
SVPDP + +P ++ VPV P T P + A+TG L D +P
Sbjct: 335 -QEEDSVPDPVEEEKP-----PVEEPVPVPPVTEAVSPPPPPKTKVADTGDLLGLNDPNP 388
>03_01_0415 + 3191392-3191952
Length = 186
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +1
Query: 391 SVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPR-WRREWTANTGPP--LPAPDYSPQQ 561
S P+P + ++ R + + PSTSP P W +N+ PP LP P +S Q
Sbjct: 65 SSPEPKTPKSQPHHGKKRSRAISISPSTSPPSRPELWAGPAFSNSPPPSSLPIPKFSLHQ 124
Query: 562 PRRLKSALKSA 594
R + L A
Sbjct: 125 KRSVSLELPPA 135
>07_01_0678 -
5103836-5104613,5104697-5104888,5104994-5105036,
5105712-5105835,5105924-5106016,5106754-5106931,
5107032-5107138,5108098-5108179,5108277-5108314,
5108409-5108495,5109025-5109135,5109282-5109773
Length = 774
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = +1
Query: 436 EEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRLKSA 582
EE + P P+ +PE PR R A P P P P++PRR +A
Sbjct: 69 EEEEAPAPA-PAPAPEPAPRKARLPRACNSKPKPPPPPPPERPRRRAAA 116
>09_06_0108 -
20912236-20912364,20912470-20912601,20912718-20913071,
20913161-20913407,20913489-20913565,20913971-20914045,
20914118-20914219,20914329-20914447,20914861-20914984,
20915081-20915131,20915247-20915345,20915839-20915949
Length = 539
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/64 (25%), Positives = 26/64 (40%)
Frame = +1
Query: 136 LQKNEHSIHKMGILNAFETNRRINEGERRPQYSDMTYPPFVRSMQVNHGFNNDDELPRIP 315
L +E + + +L + N NE R ++TY PF G +N D + + P
Sbjct: 352 LPADETKVMTVNLLKTMDPNDVQNEKSRGQLTLEVTYKPFKEEDMEKEGIDNADVVEKAP 411
Query: 316 TRDP 327
P
Sbjct: 412 DGTP 415
>03_02_0642 +
10086400-10086505,10086675-10087014,10087072-10087156,
10088679-10088764,10089154-10089331,10089425-10089624,
10089964-10090297
Length = 442
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 444 DLLQVGEWTTTLCRIGDGTAVMPRIRSIERSVGRILDSYWI 322
D LQ+G+W + +C + P +S+ERS R L Y +
Sbjct: 226 DSLQLGQWLSFVCLVNSAVPDTPGAKSMERS--RTLSVYTV 264
>01_06_0868 -
32587618-32587875,32588239-32588318,32588518-32588583,
32589896-32590523
Length = 343
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +1
Query: 400 DPAQSGRPFSY-LEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPD 546
D G+P++Y L P S SP W R W GP P D
Sbjct: 63 DNLVDGKPYAYFLYTPFSLTPSSASASPRRAQPWGRTWARPPGPTWPRSD 112
>03_01_0658 +
4818401-4818540,4818605-4819201,4819694-4819949,
4820038-4820723,4821009-4821147,4821378-4821514,
4821805-4822077,4822175-4822382,4822660-4822731,
4823230-4823460,4824269-4824532,4825127-4825268,
4825355-4825467
Length = 1085
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 6/40 (15%)
Frame = +1
Query: 436 EEIKRTVPVRPSTSPEEDPR------WRREWTANTGPPLP 537
+E+K + P+T PEED W R+W N PP P
Sbjct: 523 QEVKSVLTEAPAT-PEEDSYFWISTDWLRQWADNVNPPSP 561
>01_06_0747 -
31645136-31646521,31647870-31648142,31649080-31649148,
31649486-31649614
Length = 618
Score = 29.1 bits (62), Expect = 3.7
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 472 TSPEEDPRWRREWTANTGPPLPAPDYSPQ 558
T P+ P ++++W + P PAP PQ
Sbjct: 315 TQPQSFPPYQQQWPQQSSQPAPAPVAQPQ 343
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Frame = +1
Query: 397 PDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGP---PLPAPDYSPQQP 564
P P Q P + + ++P P+ +P +DP P PLPAP S P
Sbjct: 545 PSPPQDPAPSPPHDPLAPSLPQAPAATPPQDPALTPPRAPTPTPPQAPLPAPSKSRAPP 603
>11_02_0073 -
8020401-8020512,8020594-8020679,8020761-8020921,
8021196-8021400,8021664-8021697,8022352-8022422,
8023363-8023542,8023625-8023765,8023859-8023975,
8024074-8024469
Length = 500
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 268 AYFLQKVDTSCLNTAVVSHPHLFFYLSRMRSI 173
AYF K+D+SCL V S H +FY +++I
Sbjct: 289 AYFFLKLDSSCL---VWSQSHSYFYFYMVKTI 317
>10_08_1026 +
22400551-22401161,22401437-22401632,22401837-22401889,
22402369-22402819
Length = 436
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +1
Query: 400 DPAQSG--RPFSYLEEIKRT-VPVRPSTSPEEDPRWRREWTANTGPPLPAP 543
DP+ SG RP +E VP STS + P EW + PP P P
Sbjct: 84 DPSASGNSRPVLVTDEWGEPGVPEPQSTSAADPPTNDDEWGGDPAPPPPPP 134
>04_03_1017 + 21747044-21748051
Length = 335
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +1
Query: 445 KRTVPVRPSTSPEEDPRWRR---EWTANTGPPLPA-PDYSPQQPRR 570
+R P +PE PR R +++ +T P A PDYSP P R
Sbjct: 169 RRAAASSPDYTPESPPRRRAASPDYSPSTPPRRAASPDYSPSTPPR 214
>03_03_0234 +
15669463-15669773,15669866-15670046,15670133-15670297,
15670426-15670992
Length = 407
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 251 LL*EVCKSTTASITTMSCHVSQHGIQ*ESRIRPTDRSIDLIRGITAVPSPIRHKVVV 421
LL ++C ST+A+ T + H Q ++R DLI G A +PI K++V
Sbjct: 174 LLSDICISTSAAPTYLPAHCFQTTDDATGKVR----EFDLIDGGVAANNPITKKIMV 226
>07_03_1378 +
26158233-26158562,26159075-26159176,26159551-26159850,
26160006-26160068
Length = 264
Score = 28.3 bits (60), Expect = 6.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 502 REWTANTGPPLPAPDYSPQQPR 567
R N+GPP P D++P+ PR
Sbjct: 149 RPLRVNSGPPPPRDDFAPRSPR 170
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 466 PSTSPEEDPRWRREW-TANTGPPLPAPDYS 552
PS+SP PR R +W A+ PP + +Y+
Sbjct: 206 PSSSPTRTPRLRTDWENASVQPPWASANYT 235
>02_01_0218 +
1433310-1435620,1435672-1435951,1436461-1436524,
1436557-1436562
Length = 886
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +1
Query: 454 VPVRPSTSPEEDPRW----RREWTANT-GPPLPAPDYSPQQPRRLKSA 582
+P+ PS SP P ++A+T PP P P SP PRR +A
Sbjct: 4 LPLLPSRSPRRRPLLLAILSNTFSASTRAPPPPLPPLSPLLPRRADAA 51
>09_04_0180 + 15367737-15367755,15368874-15369739
Length = 294
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/62 (32%), Positives = 22/62 (35%)
Frame = +1
Query: 388 RSVPDPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPR 567
R +P P S RP E K P PE +P E P P P P P
Sbjct: 135 RPMPIPTPSPRPRPPDPEPKPDPEPDPELEPEPEPEPDPEPEPEPPTPKPIPTPIPSPPP 194
Query: 568 RL 573
RL
Sbjct: 195 RL 196
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +2
Query: 353 DRSIDLIRGITAVPSPIRHKVVVHSPTWRRSNERCLCGHRLLPKKILGGVGNG 511
+ SI+ G +V +RH+ +V W + L + LP LGG+ +G
Sbjct: 811 EASIEAFAGEVSVLPRVRHRNIVRLLGWAANRRTRLLFYDYLPNGTLGGLLHG 863
>01_05_0432 - 22087658-22087999
Length = 113
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 400 DPAQSGRPFSYLEEIKRTVPVRPSTSPEEDPRWRRE 507
DPA+ R + ++ + RPST P PRWR++
Sbjct: 76 DPARRAR--AIVQAVTHCRLSRPSTPPPRRPRWRKK 109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,421,216
Number of Sequences: 37544
Number of extensions: 485656
Number of successful extensions: 1552
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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