Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m12
         (717 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    26   1.3  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   7.2  
AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.          23   9.5  
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript...    23   9.5  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   9.5  

>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +1

Query: 457 PVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPR 567
           P RP+      P+  R    N GPP       PQ PR
Sbjct: 178 PARPNPGMPPGPQMMRP-PGNVGPPRTGTPTQPQPPR 213


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = +1

Query: 496 WRR--EWTANTGPPLPAPDYSPQQPRRLKSALKSAY 597
           W R  + TA    P P P Y P QP  L +++  +Y
Sbjct: 363 WNRFTQSTAMHNQP-PPPPYQPPQPYSLMASVAPSY 397


>AY846632-1|AAW31598.1|  412|Anopheles gambiae SAGLIN protein.
          Length = 412

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 553 PQQPRRLKSALKSAYM*HQVKFNRFL 630
           PQ  R+L+++L +  + H  KF+RF+
Sbjct: 297 PQHFRQLQTSLATIELKHWRKFDRFV 322


>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1248

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 496 WRREWTANTGPP 531
           W+REW AN   P
Sbjct: 880 WQREWDANASNP 891


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 460 VRPSTSPEEDPRWRREWTANTGPP 531
           +R     E   RW+ +WT   G P
Sbjct: 860 IRKRQREETMRRWQDQWTTGAGQP 883


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 811,844
Number of Sequences: 2352
Number of extensions: 17995
Number of successful extensions: 33
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)