Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m12
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical p...    31   0.82 
Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical pr...    31   0.82 
Z50004-1|CAA90291.1|  396|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical p...    29   2.5  
Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    29   4.4  
Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical pr...    28   7.7  
AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical...    28   7.7  

>Z81562-9|CAN99693.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 376 WHHSRSVPDPAQSGRPFSYLEEIKRTVPVRP-----STSPEEDPRWRREW 510
           W  S  +P    S RP SY +E   T    P     ST+ +E    RR+W
Sbjct: 234 WRESMDIPKRKTSSRPSSYFKEDSSTNGASPKDGLPSTTEDETSELRRKW 283


>Z81562-8|CAN99692.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 376 WHHSRSVPDPAQSGRPFSYLEEIKRTVPVRP-----STSPEEDPRWRREW 510
           W  S  +P    S RP SY +E   T    P     ST+ +E    RR+W
Sbjct: 234 WRESMDIPKRKTSSRPSSYFKEDSSTNGASPKDGLPSTTEDETSELRRKW 283


>Z81474-10|CAN99685.1| 1376|Caenorhabditis elegans Hypothetical
           protein C18D4.2b protein.
          Length = 1376

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 376 WHHSRSVPDPAQSGRPFSYLEEIKRTVPVRP-----STSPEEDPRWRREW 510
           W  S  +P    S RP SY +E   T    P     ST+ +E    RR+W
Sbjct: 234 WRESMDIPKRKTSSRPSSYFKEDSSTNGASPKDGLPSTTEDETSELRRKW 283


>Z81474-9|CAN99684.1| 1817|Caenorhabditis elegans Hypothetical
           protein C18D4.2a protein.
          Length = 1817

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
 Frame = +1

Query: 376 WHHSRSVPDPAQSGRPFSYLEEIKRTVPVRP-----STSPEEDPRWRREW 510
           W  S  +P    S RP SY +E   T    P     ST+ +E    RR+W
Sbjct: 234 WRESMDIPKRKTSSRPSSYFKEDSSTNGASPKDGLPSTTEDETSELRRKW 283


>Z50004-1|CAA90291.1|  396|Caenorhabditis elegans Hypothetical
           protein C02B4.2 protein.
          Length = 396

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +2

Query: 452 RCLCGHRLLPKKILGGVGNGLLTQDPRYRRRIIVLNNLEDSNQP*NRLTCNIKLNLIDFY 631
           RC C H    K I+ G+  G L+ + R +R+   LN LE S +  +  T +  +NL+  Y
Sbjct: 80  RCSCRHCRYKKCIIAGMDRGELSMERRRKRK--KLNGLEGSEE--SWETEDALINLL-LY 134

Query: 632 LHIRFSRLIIGLTM 673
               + +L++   M
Sbjct: 135 KETLYQKLLLSSAM 148


>Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical
           protein Y49E10.22 protein.
          Length = 259

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 506 NGLLTQDPRYRRRIIVLNNLEDSNQP*NRLTCNIKLNLIDFY 631
           NG    D R +  I +  NLE SN+   +   ++KL LI+FY
Sbjct: 216 NGRKLSDARKKLLIDLSGNLEISNENDPKFLYDLKLKLIEFY 257


>Z81502-4|CAB04107.2|  357|Caenorhabditis elegans Hypothetical
           protein F14B6.4 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 85  LVLIILLAMYTLEYGSALQKNEHSIHKMGILNAFETNRRIN 207
           L++I+++ +   +    LQK EH  HK+ + N  ++ R  N
Sbjct: 11  LIIIVIICLLNYQIDKNLQK-EHEEHKLALTNCMKSGRIFN 50


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 324 SNKNREFVQPIVRSI*FVASQPFRPRSGTKWSSILLLG 437
           +N N E V+ I+  +     Q FR R G+KW +   +G
Sbjct: 455 ANNNDEGVKQIIPFLLIPCFQDFRDRVGSKWDNFRFIG 492


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 324 SNKNREFVQPIVRSI*FVASQPFRPRSGTKWSSILLLG 437
           +N N E V+ I+  +     Q FR R G+KW +   +G
Sbjct: 455 ANNNDEGVKQIIPFLLIPCFQDFRDRVGSKWDNFRFIG 492


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 324 SNKNREFVQPIVRSI*FVASQPFRPRSGTKWSSILLLG 437
           +N N E V+ I+  +     Q FR R G+KW +   +G
Sbjct: 455 ANNNDEGVKQIIPFLLIPCFQDFRDRVGSKWDNFRFIG 492


>Z82078-6|CAB04946.1|  257|Caenorhabditis elegans Hypothetical
           protein W09D6.5 protein.
          Length = 257

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 445 KRTVPVRPSTSPEEDPRWRREWTANTGPPLPAPDYSPQQPRRLKSALKSA 594
           K   P++ S   ++ PR   + T  + PP    + SPQ  R+ KS  KS+
Sbjct: 42  KNEKPIQTSAQQKQKPRPLMD-TVISAPPSSLKEKSPQSNRQTKSNKKSS 90


>AL132902-13|CAL64008.1|  913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.17 protein.
          Length = 913

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -1

Query: 207 IYSSICLECVQYAHFVY*VLIFLQSASIFQRVHSQKYYQHKIDYVIHISF*YYG 46
           I+S + L   +   F+       +S  I +RVH+Q YY   ID +  ++   YG
Sbjct: 262 IFSKLLLLNPKAYKFIAKATQIQESVVIGKRVHAQHYYARNIDIMTSLTSVLYG 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,554,987
Number of Sequences: 27780
Number of extensions: 412570
Number of successful extensions: 1555
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1555
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)