Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m11
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    28   1.5  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.0  
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    27   2.0  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   3.6  
SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces po...    27   3.6  

>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 21/71 (29%), Positives = 35/71 (49%)
 Frame = -3

Query: 563 AEYPKPMQEHQQPEHCAHIYSIGIQHLEQYYLA*TVVPLTAEQGSPNSPLLVIPSLQHIY 384
           ++ PKP + H  PE    I+S  I   E+     T+  +T++   P+S    +PS Q   
Sbjct: 284 SKVPKPSETHTDPEKDKKIFS-KICKTEELLELPTLSAVTSDSAQPHSLPASMPSSQPQS 342

Query: 383 GSDFGTLPI*H 351
            S+  +LP+ H
Sbjct: 343 RSE--SLPLTH 351


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +2

Query: 29  VLSLNIFYYFYYYKHCRFLCDVHTIKKIKIDAL*ENMYSNMLR 157
           +LSL I   F  YK    +  +H +K +KI AL    +S+++R
Sbjct: 114 LLSLQIVIDFVLYKLSSAMASLHYLKFVKIIALSYICFSSLIR 156


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 263 DLYEPDYLISLQPDEPVYDCLNLQLKGYDYAIL 361
           D Y  + +I +QPDE +Y  +N++  G   A L
Sbjct: 364 DAYHNELVIRVQPDEAIYFKMNIKQPGLSEAPL 396


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 27/87 (31%), Positives = 43/87 (49%)
 Frame = -1

Query: 472 TWLEPLYL*LLSRGRPTVLYL*SHHFSISMDLTLARFQYSIIITFKLQVQTVIDWLIRL* 293
           TW   LYL L  R    V    +H+FS ++ L L + Q++ I T  L V  +I +++   
Sbjct: 455 TWWGWLYLDLKERRWLYVYACFAHYFSFALVLALVQ-QFAKIQTILLFVIEIISFILL-- 511

Query: 292 ANQVIRFI*VTFKSSLICYYMICPNRI 212
              V R   V FK+S  C +++   R+
Sbjct: 512 --AVFRPF-VGFKNS-FCVFLVALTRV 534


>SPBC336.11 |||GARP complex subunit Vps52 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 35  SLNIFYYFYYYKHCRFLCDVHTIK 106
           ++N FY +++ ++ RFL  VH +K
Sbjct: 201 TMNWFYLYHFEQYSRFLDKVHVLK 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,479
Number of Sequences: 5004
Number of extensions: 55357
Number of successful extensions: 143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)