Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m11
(721 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 33 0.30
10_01_0291 + 3010685-3010838,3010954-3011489 31 0.70
10_01_0290 + 2999775-2999928,3000281-3000816 31 0.70
10_01_0288 - 2992107-2992627,2992742-2992895 31 0.70
03_05_0564 - 25655095-25655106,25656089-25656541,25656886-256569... 31 1.2
10_01_0289 + 2995946-2996099,2996248-2996783 30 1.6
01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167... 30 2.1
07_01_0626 - 4681826-4682707 29 2.8
02_01_0077 - 546033-546223,546314-546566,546635-546865,547165-54... 29 3.7
04_03_0129 - 11554917-11555033,11555470-11555613,11555807-115559... 29 4.9
10_02_0127 + 5555226-5555446,5555475-5555500,5555702-5555790,555... 28 6.5
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 6.5
09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659 28 8.6
05_05_0385 + 24566916-24567503,24568609-24568824,24568916-245692... 28 8.6
03_02_0341 - 7643426-7643973,7644340-7644505 28 8.6
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 32.7 bits (71), Expect = 0.30
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = -3
Query: 608 HSKCIPPVKEPLIPEAEYPKPMQEHQQPE 522
HS +PP+++P P+A+ + MQ +QP+
Sbjct: 949 HSYYLPPIQQPSAPQAQKQRRMQRQKQPQ 977
>10_01_0291 + 3010685-3010838,3010954-3011489
Length = 229
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 614 HEHSKCIPPVKEPLIPEAEYPKPMQEHQQPEH 519
H H K +PP EP PE PKP EH +H
Sbjct: 151 HFHKKPVPPKPEPK-PEPPKPKPEPEHPFLDH 181
>10_01_0290 + 2999775-2999928,3000281-3000816
Length = 229
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 614 HEHSKCIPPVKEPLIPEAEYPKPMQEHQQPEH 519
H H K +PP EP PE PKP EH +H
Sbjct: 151 HFHKKPVPPKPEPK-PEPPKPKPEPEHPFLDH 181
>10_01_0288 - 2992107-2992627,2992742-2992895
Length = 224
Score = 31.5 bits (68), Expect = 0.70
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -3
Query: 614 HEHSKCIPPVKEPLIPEAEYPKPMQEHQQPEH 519
H H K +PP EP PE PKP EH +H
Sbjct: 151 HFHKKPVPPKPEPK-PEPPKPKPEPEHPFLDH 181
>03_05_0564 -
25655095-25655106,25656089-25656541,25656886-25656962,
25657058-25657149,25657447-25657553,25657662-25657747,
25657861-25657977,25658205-25658288,25658400-25658479,
25658958-25659132,25659455-25659521,25660175-25660236,
25660369-25660450,25660890-25661312,25661514-25661610,
25662055-25662095,25662673-25662837
Length = 739
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/61 (26%), Positives = 33/61 (54%)
Frame = +2
Query: 116 IDAL*ENMYSNMLRNNLKNLIKSCRSVQLQIIDSVGTNHIITNQRRFKSDLYEPDYLISL 295
I L +N + M R+N + + + + +QL +D + + + +RR K+ +EP YL +
Sbjct: 231 IKQLSDNTFQLMFRSNWNDFLHTIKGIQLPSVDHLVSTIVQWFERRSKA--FEPTYLYGV 288
Query: 296 Q 298
+
Sbjct: 289 E 289
>10_01_0289 + 2995946-2996099,2996248-2996783
Length = 229
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -3
Query: 614 HEHSKCIPPVKEPLIPEAEYPKPMQEHQQPEH 519
H H K +PP +P PE PKP EH +H
Sbjct: 151 HFHKKPVPPKPDPK-PEPPKPKPEPEHPILDH 181
>01_03_0074 +
12215414-12215603,12216178-12216236,12216605-12216703,
12216820-12216946,12216989-12217252,12217382-12217503,
12217575-12217646
Length = 310
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 638 SLHVQECVHEHSKCIPPVKEPLIPEAEY 555
++H + C +EHS P +KEP + A Y
Sbjct: 155 NMHYESCYNEHSNKQPKLKEPTLLTANY 182
>07_01_0626 - 4681826-4682707
Length = 293
Score = 29.5 bits (63), Expect = 2.8
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +2
Query: 164 LKNLIKSCRSVQLQIIDSVGTNHIIT 241
L N++ +CR+++L+ I SVG ++T
Sbjct: 117 LNNMLVTCRNIKLESITSVGITRVVT 142
>02_01_0077 -
546033-546223,546314-546566,546635-546865,547165-547331,
547369-548008
Length = 493
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 593 PPVKEPLIPEAEYPKPMQEHQQP 525
PP +EP PE P P Q+ QQP
Sbjct: 67 PPSQEPDTPEPAPPTPPQQQQQP 89
>04_03_0129 -
11554917-11555033,11555470-11555613,11555807-11555999,
11556083-11556139,11556300-11556403,11556882-11556953,
11557069-11557187,11557639-11557783,11558527-11558672,
11558758-11558827,11559000-11559056,11559081-11559228,
11559311-11559432,11559649-11559845,11560296-11560350,
11560468-11560680,11561239-11561386,11561515-11561585,
11563286-11563316,11563532-11563623,11565621-11565688,
11567895-11568069
Length = 847
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 605 SKCIPPVKEPLIPEAEYPKPMQEHQQPEHCAHIYSIGIQHLEQYY 471
S C V E L PE++ P+ +H + I SI Q LEQ +
Sbjct: 112 SSCFIDVHELLAPESQSNLPLSKHVHTDEYILIKSIPTQLLEQSF 156
>10_02_0127 +
5555226-5555446,5555475-5555500,5555702-5555790,
5558112-5558843
Length = 355
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 406 ITSRGLLGDPCSAVKGT-TVQAR*YC 480
I+SRG LG PC KG ++ R YC
Sbjct: 52 ISSRGSLGSPCLVYKGVIMIRERGYC 77
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 28.3 bits (60), Expect = 6.5
Identities = 20/70 (28%), Positives = 34/70 (48%)
Frame = +2
Query: 512 ERNVQVVDVPAWALGTLLRVSRALLPEGCTLNVHEHTPEHEEIRYVPDNQLIDLKQQLEG 691
ERN ++ ++ +W + L R + L E + V I VP+N I L +++EG
Sbjct: 89 ERNTRLENM-SWRIWNLARKKKQYLLENLSFGVSGG------ISLVPENTYISLLEEIEG 141
Query: 692 MGGSRADKKK 721
SR K++
Sbjct: 142 EEASRLAKQR 151
>09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659
Length = 522
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 452 PLTAEQGSPNSPLLVIPSLQH--IYGSDFGTLPI*HN 348
PLTA SP L +P L H +Y S G L + H+
Sbjct: 65 PLTASSSSPRLSLDFVPDLSHFSLYDSHHGLLLLRHH 101
>05_05_0385 +
24566916-24567503,24568609-24568824,24568916-24569241,
24569906-24570338,24570769-24571281
Length = 691
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 542 AWALGTLLRVSRALLPEGCTLNVHEHTPEHEEIRYVP 652
AW + T LRVSRA C E PE E P
Sbjct: 126 AWNIVTQLRVSRAGRERACAAGPDEEQPEAEAAAPAP 162
>03_02_0341 - 7643426-7643973,7644340-7644505
Length = 237
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 614 HEHSKCIPPVKEPLIPEAEY---PKPMQEHQQPEHCAHIYS 501
H+H +PPV EP + ++ P + +H+ P +Y+
Sbjct: 179 HDHDHSLPPVHEPPVTVPDHKPAPVTVPDHKPPSTTTPVYA 219
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,288,091
Number of Sequences: 37544
Number of extensions: 338707
Number of successful extensions: 919
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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