Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m11
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical ...    93   1e-19
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical p...    29   2.5  
AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z46791-7|CAA86760.2|  473|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    28   5.8  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    28   5.8  
U42836-2|ABC48244.1|  278|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>AF036694-5|AAB88341.1|  186|Caenorhabditis elegans Hypothetical
           protein CD4.3 protein.
          Length = 186

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 51/148 (34%), Positives = 84/148 (56%)
 Frame = +2

Query: 251 RFKSDLYEPDYLISLQPDEPVYDCLNLQLKGYDYAILEACQSQIHRYAEVMGLQVEDCWA 430
           R  S LYEP +  S +   P Y+ +N++++G+D+  LE  Q+ IH+ A+  G  V D +A
Sbjct: 29  RDASLLYEPKFQDSRE--FPEYNTINVRIQGHDFGSLEKYQAYIHKTAKRFGFTVVDSYA 86

Query: 431 TPAQQLKVQRFKPGSTALDAEYQLNIYERNVQVVDVPAWALGTLLRVSRALLPEGCTLNV 610
             AQ  K   +KP ST  ++E  ++ Y+R V++ DV A       ++ RA +P G T+ V
Sbjct: 87  VAAQTQKAITYKPYSTVSESEIDMSTYDRVVRLSDVAAPRFSLFSQIIRAHIPIGVTMTV 146

Query: 611 HEHTPEHEEIRYVPDNQLIDLKQQLEGM 694
            EH    E+ RY+PD  L   +++L+ +
Sbjct: 147 KEHEKVDEDSRYIPDLLLKQKQEELKAL 174


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = +2

Query: 449 KVQRFKPGSTALDAEYQLNIYERNVQVVDVPAWALGTLLRVSRALLPEGCTLNV-HEHTP 625
           K++RF   + A   E Q  + E+N      P WALG +  ++  +L  G   NV  E   
Sbjct: 214 KIERFLASARAFRNE-QKELLEKN------PTWALGDVTTLNVNILKGGVQFNVIPEKFE 266

Query: 626 EHEEIRYVPDNQLIDLKQQLE 688
            + +IR  P+    +++ +L+
Sbjct: 267 AYVDIRLTPNQDFGEIRAKLD 287


>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 593 PPVKEPLIPEAEYPKPMQEHQQPEHCAHIY 504
           PPV+EP  P++ YP P    Q+P H +  Y
Sbjct: 340 PPVREPETPDSGYPSPAP--QEPAHPSPSY 367


>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +2

Query: 11  PGFPLKVLSLNIFYYFYYYKHCRFLCDVHTIKKI---KIDAL*ENMYSNMLRNNLKNLIK 181
           P +   V  + I Y+F Y+   RFL +   +K +   K +   E  YS  L NN+ + +K
Sbjct: 72  PHYRKTVFPIFIVYFFIYF-SSRFLTETQKLKSLETMKHNGTNEYFYSKCLPNNMDDSLK 130

Query: 182 SCRSV 196
               V
Sbjct: 131 VAEKV 135


>U97196-12|AAB52456.2|  564|Caenorhabditis elegans Hypothetical
           protein B0207.1 protein.
          Length = 564

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 596 IPPVKEPLIPEAEYPKPMQEHQQP 525
           IPP   P++ + +YPKP    Q P
Sbjct: 45  IPPAPRPIVNQIQYPKPTNPVQNP 68


>AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical
           protein Y54G2A.52 protein.
          Length = 97

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 185 NFLSNFLNYFEACLNTCSLK 126
           N  SNF+ YFE C N C L+
Sbjct: 46  NCPSNFIYYFECCANECCLR 65


>Z46791-7|CAA86760.2|  473|Caenorhabditis elegans Hypothetical
           protein C09G5.1 protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 17  FPLKVLSLNIFYYFYYYKH 73
           FPL  +  NIFY+ YY K+
Sbjct: 445 FPLAFIIFNIFYWIYYLKY 463


>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = -3

Query: 626 QECVHEHSKCIPPVKEPLIPEAEYPKPMQEHQQ-PEHCAHIYSIGIQHLEQYYLA*TVVP 450
           Q+  H++S+   P ++P   + +Y   +Q+ QQ P    H+YS   Q  +Q Y      P
Sbjct: 208 QQNYHQNSQ--NPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQQNYQN-LYTP 264

Query: 449 LTAEQGSPNSPLLVIPSLQHIYGSDFGTLP 360
             A+Q    +    IP     +GS + T P
Sbjct: 265 PPAQQAPIPTEKTQIPR-PPSHGSAWPTFP 293


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = -3

Query: 626 QECVHEHSKCIPPVKEPLIPEAEYPKPMQEHQQ-PEHCAHIYSIGIQHLEQYYLA*TVVP 450
           Q+  H++S+   P ++P   + +Y   +Q+ QQ P    H+YS   Q  +Q Y      P
Sbjct: 230 QQNYHQNSQ--NPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQQNYQN-LYTP 286

Query: 449 LTAEQGSPNSPLLVIPSLQHIYGSDFGTLP 360
             A+Q    +    IP     +GS + T P
Sbjct: 287 PPAQQAPIPTEKTQIPR-PPSHGSAWPTFP 315


>U42836-2|ABC48244.1|  278|Caenorhabditis elegans Hypothetical
           protein T21F2.1b protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 17  FPLKVLSLNIFYYFYY 64
           FPL   + NIFY+FYY
Sbjct: 255 FPLLFTAFNIFYWFYY 270


>U42836-1|ABC48243.1|  497|Caenorhabditis elegans Hypothetical
           protein T21F2.1a protein.
          Length = 497

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 17  FPLKVLSLNIFYYFYY 64
           FPL   + NIFY+FYY
Sbjct: 474 FPLLFTAFNIFYWFYY 489


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,405,946
Number of Sequences: 27780
Number of extensions: 317164
Number of successful extensions: 973
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)