Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m11
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    26   0.31 
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.7  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    24   1.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   6.7  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 17  FPLKVLSLNIFYYFYY 64
           FPL  L++N+FY+F Y
Sbjct: 431 FPLFFLAINVFYWFAY 446


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 516 RSYIFNWYSASRAVLPGLNRCTFNC*AGVAQQSSTCNPITS 394
           R+  F +Y  +R +LP   +  F    G+AQ  +T   I S
Sbjct: 190 RAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVS 230


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 516 RSYIFNWYSASRAVLPGLNRCTFNC*AGVAQQSSTCNPITS 394
           R+  F +Y  +R +LP   +  F    G+AQ  +T   I S
Sbjct: 190 RAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVS 230


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +2

Query: 425  WATPAQQLKVQRFKPGSTALDAEYQLNIYERNVQVVDVPAWALGTLLRVSRALLPE 592
            W T      VQ++   +    + YQ+ +   N      P+  L T  + S+ ++PE
Sbjct: 1410 WDTAQISSTVQKYTLENLLCGSRYQIYVTAYNGIGTGDPSDMLNTRTKGSKPIIPE 1465


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 78  GFCVTYIQ*KKLKLMHFERTCI 143
           G C +Y+Q    K+   ER+C+
Sbjct: 55  GRCSSYLQVSGSKIWQMERSCM 76


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,797
Number of Sequences: 438
Number of extensions: 4009
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)