Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m09
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme Ubc3|Schizo...    30   0.31 
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch...    27   2.9  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   5.1  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   5.1  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    26   5.1  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    26   6.8  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   6.8  
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    25   9.0  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.0  

>SPBP16F5.04 |ubc3|ubcp3|ubiquitin conjugating enzyme
           Ubc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 22/75 (29%), Positives = 30/75 (40%)
 Frame = +2

Query: 203 SKMDALADILQPYKEIVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMT 382
           SK  AL  +++ YKE+  +    +T G      F  WD   QG        PF GG+   
Sbjct: 2   SKAMALRRLMKEYKELTENGPDGITAGPSNEDDFFTWDCLIQGPDG----TPFEGGLYPA 57

Query: 383 ILNLQYGYILRDDTM 427
            L     Y L   T+
Sbjct: 58  TLKFPSDYPLGPPTL 72


>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 487

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = +2

Query: 455 LNIVY----VLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQTEDPKL 586
           LN VY    VL   N+T ++ + WA  G  G+    L+ Y   + PKL
Sbjct: 270 LNCVYWGRKVLSDINWTIREGERWALTGSNGSGKTTLLAYVVGDHPKL 317


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 385 DGHNNTSEERHDADPASAALLVYVPAY 305
           DG N T+   HD D  +  LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 733 ERDHSSGQYYRERHAFCALILN 668
           E  +  G YY  +HAFC+  LN
Sbjct: 511 ENGYIQGYYYDPKHAFCSQPLN 532


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 385 DGHNNTSEERHDADPASAALLVYVPAY 305
           DG N T+   HD D  +  LLVY P Y
Sbjct: 513 DGKNTTAGN-HDVDNNTPPLLVYFPNY 538


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 409 YVTILQVEDGHNNTSEERHDADPASAA 329
           Y  +   EDG  N +EE + +DPA +A
Sbjct: 67  YDAVSATEDGWTNIAEEFNQSDPARSA 93


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/55 (21%), Positives = 26/55 (47%)
 Frame = -2

Query: 526 TDLSPNLDLLLGVIEVYQHVDDI*GQTEHVDLNHGVVTEYVTILQVEDGHNNTSE 362
           T L+    +L     ++   DD+    E++D    +++ +  I  V+D H+ T +
Sbjct: 467 TILNSRTSVLAAANPIFGRYDDMKTPGENIDFQSTILSRFDMIFIVKDEHDETKD 521


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 372 TPPRNGMMPIP 340
           +PPRN MMPIP
Sbjct: 466 SPPRNAMMPIP 476


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 274 NHWADVLRQFHMLGHIQAGQHSRD 345
           NHW   +  +H+ G ++AG  ++D
Sbjct: 525 NHWEAQIVSYHISGLLEAGLEAKD 548


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 400  ILQVEDGHNNTSEERHDADPASAALLVYVPAYETAGEHLPN 278
            I++ +DGH    E RH    ASAA   +VP     G   PN
Sbjct: 979  IIEQKDGHLYFEELRHPCINASAA-STFVPNDVVLGGESPN 1018


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,973
Number of Sequences: 5004
Number of extensions: 63028
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)