Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m09
(764 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC005943-1|AAH05943.1| 221|Homo sapiens recombination activatin... 74 5e-13
AL691442-8|CAI15323.1| 221|Homo sapiens recombination activatin... 74 5e-13
AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein pr... 74 5e-13
CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein. 72 3e-12
BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein. 44 5e-04
AL691442-7|CAI15322.1| 167|Homo sapiens recombination activatin... 44 5e-04
AL691442-9|CAI15324.1| 166|Homo sapiens recombination activatin... 43 0.001
AL691442-6|CAI15321.1| 156|Homo sapiens recombination activatin... 43 0.001
AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein is... 43 0.001
BC036522-1|AAH36522.1| 780|Homo sapiens cation channel, sperm a... 35 0.28
BC032950-1|AAH32950.1| 780|Homo sapiens cation channel, sperm a... 35 0.28
AF407333-1|AAL14105.1| 780|Homo sapiens sperm ion channel protein. 35 0.28
>BC005943-1|AAH05943.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 74.1 bits (174), Expect = 5e-13
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = +2
Query: 248 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 427
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 428 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQ----TEDPKLVET 595
I VN G AL +Y+L Y +Y +K V Q A + L+GY +P+
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYFWLLVPNPEARLQ 127
Query: 596 RFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILR 763
+ G + F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR
Sbjct: 128 QLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLR 183
>AL691442-8|CAI15323.1| 221|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 221
Score = 74.1 bits (174), Expect = 5e-13
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = +2
Query: 248 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 427
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 428 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQ----TEDPKLVET 595
I VN G AL +Y+L Y +Y +K V Q A + L+GY +P+
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYFWLLVPNPEARLQ 127
Query: 596 RFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILR 763
+ G + F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR
Sbjct: 128 QLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLR 183
>AF126023-1|AAF17232.1| 221|Homo sapiens stromal cell protein
protein.
Length = 221
Score = 74.1 bits (174), Expect = 5e-13
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = +2
Query: 248 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 427
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVRFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 428 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQ----TEDPKLVET 595
I VN G AL +Y+L Y +Y +K V Q A + L+GY +P+
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYFWLLVPNPEARLQ 127
Query: 596 RFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILR 763
+ G + F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR
Sbjct: 128 QLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLR 183
>CR457148-1|CAG33429.1| 221|Homo sapiens LOC55974 protein.
Length = 221
Score = 71.7 bits (168), Expect = 3e-12
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Frame = +2
Query: 248 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 427
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 428 IQVNMFGLALNIVYVLIYFNYTQQKVKVWAQIGLAGAVSAALIGYAQ----TEDPKLVET 595
I VN G AL +Y+L Y +Y +K V Q A + L+GY +P+
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKRVVLLQT--ATLLGVLLLGYGYFWLLVPNPEARLQ 127
Query: 596 RFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILR 763
+ + F + SPL L ++IQ KST+ + +P+ ++ + + W LYG LR
Sbjct: 128 QLALFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLR 183
>BC009621-1|AAH09621.1| 167|Homo sapiens RAG1AP1 protein protein.
Length = 167
Score = 44.4 bits (100), Expect = 5e-04
Identities = 28/88 (31%), Positives = 41/88 (46%)
Frame = +2
Query: 248 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 427
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 428 IQVNMFGLALNIVYVLIYFNYTQQKVKV 511
I VN G AL +Y+L Y +Y +K KV
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKAKV 97
Score = 32.3 bits (70), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 662 EIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILR 763
++IQ KST+ + +P+ ++ + + W LYG LR
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLR 129
>AL691442-7|CAI15322.1| 167|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 167
Score = 44.4 bits (100), Expect = 5e-04
Identities = 28/88 (31%), Positives = 41/88 (46%)
Frame = +2
Query: 248 IVGSIAAFVTIGQMFSGSFICWDIYKQGSTRGIGIMPFLGGVVMTILNLQYGYILRDDTM 427
I G+ F T+G +G + S + +PFL V + L YG + D +
Sbjct: 11 IYGACVVF-TLGMFSAGLSDLRHMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDGIL 69
Query: 428 IQVNMFGLALNIVYVLIYFNYTQQKVKV 511
I VN G AL +Y+L Y +Y +K KV
Sbjct: 70 IVVNTVGAALQTLYILAYLHYCPRKAKV 97
Score = 32.3 bits (70), Expect = 2.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +2
Query: 662 EIIQNKSTEGMPFPIILSGTVVTFMWLLYGIILR 763
++IQ KST+ + +P+ ++ + + W LYG LR
Sbjct: 96 KVIQTKSTQCLSYPLTIATLLTSASWCLYGFRLR 129
>AL691442-9|CAI15324.1| 166|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 166
Score = 42.7 bits (96), Expect = 0.001
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 530 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 697
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 47 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 106
Query: 698 FPIILSGTVVTFMWLLYGIILR 763
+P+ ++ + + W LYG LR
Sbjct: 107 YPLTIATLLTSASWCLYGFRLR 128
>AL691442-6|CAI15321.1| 156|Homo sapiens recombination activating
gene 1 activating protein 1 protein.
Length = 156
Score = 42.7 bits (96), Expect = 0.001
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 530 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 697
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 37 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 96
Query: 698 FPIILSGTVVTFMWLLYGIILR 763
+P+ ++ + + W LYG LR
Sbjct: 97 YPLTIATLLTSASWCLYGFRLR 118
>AF126024-1|AAF17233.1| 179|Homo sapiens stromal cell protein
isoform protein.
Length = 179
Score = 42.7 bits (96), Expect = 0.001
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = +2
Query: 530 AGAVSAALIGYAQ----TEDPKLVETRFGTIITAFMFYLIASPLFGLKEIIQNKSTEGMP 697
A + L+GY +P+ + G + F + SPL L ++IQ KST+ +
Sbjct: 60 ATLLGVLLLGYGYFWLLVPNPEARLQQLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLS 119
Query: 698 FPIILSGTVVTFMWLLYGIILR 763
+P+ ++ + + W LYG LR
Sbjct: 120 YPLTIATLLTSASWCLYGFRLR 141
>BC036522-1|AAH36522.1| 780|Homo sapiens cation channel, sperm
associated 1 protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 316 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRS 450
H+ QH +HH VP R H Q + H RHH++ QH +S
Sbjct: 198 HLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>BC032950-1|AAH32950.1| 780|Homo sapiens cation channel, sperm
associated 1 protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 316 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRS 450
H+ QH +HH VP R H Q + H RHH++ QH +S
Sbjct: 198 HLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
>AF407333-1|AAL14105.1| 780|Homo sapiens sperm ion channel protein.
Length = 780
Score = 35.1 bits (77), Expect = 0.28
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +1
Query: 316 HIQAGQHSRDRHHAVPRRCCYDHPQLAIWLHTP*RHHDSSQHVRS 450
H+ QH +HH VP R H Q + H RHH++ QH +S
Sbjct: 198 HLSGLQHDESQHHQVPHRGWPHHHQ--VHHHGRSRHHEAHQHGKS 240
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,489,260
Number of Sequences: 237096
Number of extensions: 2342946
Number of successful extensions: 6769
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6756
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9199990470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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