Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m04
         (343 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.15 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.15 
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   3.2  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    25   4.3  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   4.3  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    24   5.6  
SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit L17...    24   7.5  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    23   9.8  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    23   9.8  
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem...    23   9.8  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    23   9.8  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    23   9.8  

>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = +2

Query: 98  QEDYNPNG-NGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 208
           ++DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 117 RDDYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.5 bits (63), Expect = 0.15
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 244 NFLRYSLLPTASTRERGRLEVRSALGRVHVICTVVDRFV 128
           NF    ++P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +1

Query: 130  RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 237
            R + ++C  R P  RP  +     PW + +  K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 342 FFFKHYNMFIYLFR*HKFI*NFEI 271
           FF K Y+ F+++FR + FI +FE+
Sbjct: 188 FFLKQYHNFMFVFRDY-FIRDFEL 210


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 38  HIKMKFFMIFVLALLAMANAQEDYNPNGNGYEPIDNGAYYVDPPQG 175
           ++   F  I ++ +LAM++    +N     +  I+N   Y D P G
Sbjct: 218 YLNTLFLFISMIVILAMSSKNHGFNETSKVWSHIEN---YTDWPDG 260


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 339 FFKHYNMFIYLFR*HKFI*NFEIYC*YIISLL 244
           FF  YN FI+ F+   FI ++     Y+I +L
Sbjct: 470 FFNGYNAFIHGFKYRSFITSYIGIAAYVIMIL 501


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 107 YNPNGNGYEPIDNGAYYVDPPQGRP 181
           Y  +G G +P + G YY + P+G+P
Sbjct: 481 YCVHGVG-KPTERGYYYTNNPEGQP 504


>SPCC126.05c |mrpl17||mitochondrial ribosomal protein subunit
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 268

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 130 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 237
           +T+  R  L      P L   Y + WC+  E+KN L
Sbjct: 217 KTFLLRARLLNGLDVPNLQNVYDWVWCTYDELKNKL 252


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 130 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWE 222
           R +  +C+ + PS RP   +    PW  +++
Sbjct: 553 RDFVNKCLNKNPSLRPDYHELANHPWLLKYQ 583


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 113 PNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           PN N  +P  NG   + PP    Y KPT
Sbjct: 51  PNSN--QPYPNGPVCIYPPNIYLYAKPT 76


>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
           membrane translocase Oxa101|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 77  LLAMANAQEDYNPNGNGYEPIDNGAYYVDPPQGRPYF 187
           L  ++ A   +NP+   Y  I N AY ++   G P++
Sbjct: 51  LAEVSTATSGFNPSWWPYALIQNTAYTINVYAGAPWW 87


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 160 GPSPRPTLLQAYPFPWC 210
           G SPR  +L A   PWC
Sbjct: 521 GHSPRVLVLAATNLPWC 537


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +1

Query: 67  RPRSAGYGQRSRRL 108
           RPRS+G+  R RRL
Sbjct: 552 RPRSSGHSSRRRRL 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,430,028
Number of Sequences: 5004
Number of extensions: 29745
Number of successful extensions: 91
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)