Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m04
(343 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0382 - 22501041-22501279,22501717-22501810 30 0.41
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 29 1.3
06_03_0809 + 24814590-24816593 28 2.2
08_02_1289 - 25923916-25924586,25925148-25926630 27 2.9
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 2.9
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406... 27 5.1
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 27 5.1
09_01_0025 - 441528-444284 26 6.7
02_03_0147 - 15738479-15738650,15739015-15739256 26 6.7
01_06_0390 - 28938485-28938751,28939924-28941282 26 6.7
10_07_0154 + 13487971-13488168,13488259-13488483,13488592-134904... 26 8.9
08_02_0194 + 14084828-14085025,14085116-14085788,14085855-140870... 26 8.9
07_01_0043 + 343777-343953,345198-346716,346831-346977,347378-34... 26 8.9
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 26 8.9
04_02_0026 + 8708765-8710935,8711021-8711272,8711353-8711463,871... 26 8.9
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 30.3 bits (65), Expect = 0.41
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 104 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 220
D P+ + Y+P + YY DPP Y+ P P P GG
Sbjct: 55 DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 28.7 bits (61), Expect = 1.3
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 113 PNGNGYEPIDNGAYYVDPPQGRPYFKP 193
P G Y P G Y PP+G+P + P
Sbjct: 281 PQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>06_03_0809 + 24814590-24816593
Length = 667
Score = 27.9 bits (59), Expect = 2.2
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 50 KFFMIFVLALLAMANAQEDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 199
+F ++ VL + M AQ+ Y N G DNG+ + G P P
Sbjct: 6 RFLLLVVLLAVPMTAAQQQYEANAQGDCYTDNGSSVLGYTCGTAASPPPP 55
>08_02_1289 - 25923916-25924586,25925148-25926630
Length = 717
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = -1
Query: 331 ALQYVYLFIPLT*I---HMKF*NILLIHYFVINFLRYSLLPTASTRERGRLEV 182
ALQY+Y +P+ + H+K NILL F YSL+P + +L V
Sbjct: 519 ALQYLYDELPMLTVPHGHLKSSNILLNDRFEPLLTDYSLVPVMNQSHSAQLMV 571
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 2.9
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 145 RCILRGPSPR-PTLLQAYPFPWCSRW 219
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
>08_01_0461 -
4063614-4064375,4064439-4066017,4066041-4066086,
4066416-4066933,4067435-4067694,4068089-4068594,
4068667-4071319
Length = 2107
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 118 WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 237
W RLR R +L+ P+P P + + RW K +L
Sbjct: 836 WDRLRENSFRILLQFPTPLPGISSSTSIDSVIRWAKKLVL 875
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 67 RPRSAGYGQRSRRLQP 114
RP++AG+G+R RRL P
Sbjct: 188 RPQAAGHGRRRRRLGP 203
>09_01_0025 - 441528-444284
Length = 918
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +2
Query: 62 IFVLALLAMANAQEDYNPNGNGYEPI 139
+F LA+AN E N NGNGY P+
Sbjct: 48 VFAPPSLAVANRNE--NGNGNGYGPL 71
>02_03_0147 - 15738479-15738650,15739015-15739256
Length = 137
Score = 26.2 bits (55), Expect = 6.7
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +1
Query: 82 GYGQRSRRLQP*WKRLRTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNI 234
G +R RR P RT R+RC +R P PR + W +R E+ +
Sbjct: 49 GQRRRGRRSPP-----RTRRRRCAVRPPRPRWHDDELRNAVWTAREEINGL 94
>01_06_0390 - 28938485-28938751,28939924-28941282
Length = 541
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +1
Query: 130 RTYRQRCILRGPSPRPTLLQAYPFPW 207
+ + RC R PS RPT Q P+
Sbjct: 234 KNFLSRCFTRNPSDRPTAAQLLEHPF 259
>10_07_0154 +
13487971-13488168,13488259-13488483,13488592-13490492,
13490578-13490829,13491110-13491191,13491466-13491657
Length = 949
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 84 LWPTLKKITTLMETATNLSTTVHI--TWTLPKADLTSSLPLSLVLAVGSKEYLRKLIT 251
L+P ++ T + TN+ ++V T T P +T P SLV+ +G +++ T
Sbjct: 389 LFPDSQQPTQSAQQTTNVPSSVGSVQTTTFPVDSITGPTPCSLVVPIGRAGKTKEVAT 446
>08_02_0194 +
14084828-14085025,14085116-14085788,14085855-14087082,
14087435-14087686,14087767-14087877,14087967-14088048,
14088323-14088514
Length = 911
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 84 LWPTLKKITTLMETATNLSTTVHI--TWTLPKADLTSSLPLSLVLAVGSKEYLRKLIT 251
L+P ++ T + TN+ ++V T T P +T P SLV+ +G +++ T
Sbjct: 403 LFPNSQQPTQSAQQTTNVPSSVGSVQTSTFPVDSITGPTPCSLVVPIGRAGKTKEVAT 460
>07_01_0043 +
343777-343953,345198-346716,346831-346977,347378-347940
Length = 801
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -1
Query: 115 RVVIFLSVGHSQQSEDENHEEFHFYMI 35
R+ + +++G S D++ + FHFY++
Sbjct: 20 RISLTVAIGSSNDGLDKSIKPFHFYLV 46
>05_05_0156 + 22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -1
Query: 184 VRSALGRVHVICTVVDRFVAVSIRVVIFLSVGHSQQSEDENHEEFHFYMITSYHRRK 14
+R G VH D+F+ +S I QS+DEN + H + +YH +K
Sbjct: 989 IRILYGEVHDHSPFDDKFLPLSFDAQI------DSQSDDENDKSGHGRIKGNYHSKK 1039
>04_02_0026 +
8708765-8710935,8711021-8711272,8711353-8711463,
8711553-8711634,8711909-8712100
Length = 935
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 84 LWPTLKKITTLMETATNLSTTVHI--TWTLPKADLTSSLPLSLVLAVGSKEYLRKLIT 251
L+P ++ T + TN+ ++V T T P +T P SLV+ +G +++ T
Sbjct: 338 LFPDSQQPTQSAQQTTNVPSSVGSVQTTTFPVDSITGPTPCSLVVPIGRAGKTKEVAT 395
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,033,466
Number of Sequences: 37544
Number of extensions: 202937
Number of successful extensions: 562
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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