Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m04
         (343 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068505-1|AAH68505.1|  644|Homo sapiens zinc finger protein 746...    31   0.71 
AK128244-1|BAC87351.1|  459|Homo sapiens protein ( Homo sapiens ...    31   0.71 
AK055975-1|BAB71061.1|  242|Homo sapiens protein ( Homo sapiens ...    31   0.71 
AY048121-1|AAK85703.1|  659|Homo sapiens RAS guanyl releasing pr...    30   1.6  
AY048119-1|AAK85701.1|  673|Homo sapiens RAS guanyl releasing pr...    30   1.6  
BC150202-1|AAI50203.1|  659|Homo sapiens RASGRP4 protein protein.      29   2.9  
BC146669-1|AAI46670.1|  659|Homo sapiens RASGRP4 protein protein.      29   2.9  
AY048120-1|AAK85702.1|  170|Homo sapiens RAS guanyl releasing pr...    29   2.9  
AF448437-1|AAL87858.1|  673|Homo sapiens guanyl nucleotide relea...    29   2.9  
AB018359-1|BAA84924.1| 1220|Homo sapiens ABP130 protein.               29   5.0  
AB018358-1|BAA84923.1| 1181|Homo sapiens ABP125 protein.               29   5.0  
BC111545-1|AAI11546.1|  569|Homo sapiens mex-3 homolog B (C. ele...    28   8.7  
BC036211-1|AAH36211.1|  569|Homo sapiens MEX3B protein protein.        28   8.7  
AY950678-1|AAY34146.1|  569|Homo sapiens MEX3B protein.                28   8.7  
AL136778-1|CAB66712.2|  266|Homo sapiens hypothetical protein pr...    28   8.7  
AK131424-1|BAD18571.1|  569|Homo sapiens protein ( Homo sapiens ...    28   8.7  
AB095929-1|BAC23105.1|  501|Homo sapiens KIAA2009 protein protein.     28   8.7  

>BC068505-1|AAH68505.1|  644|Homo sapiens zinc finger protein 746
           protein.
          Length = 644

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 113 PNGNGYEPIDNGAYYVDPPQG-RPYFKPTPFPGARGG 220
           P G  Y   DNG   +DP Q  RP+ +P  +PG   G
Sbjct: 397 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 433


>AK128244-1|BAC87351.1|  459|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46378 fis, clone TESTI4052775. ).
          Length = 459

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 113 PNGNGYEPIDNGAYYVDPPQG-RPYFKPTPFPGARGG 220
           P G  Y   DNG   +DP Q  RP+ +P  +PG   G
Sbjct: 212 PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 248


>AK055975-1|BAB71061.1|  242|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31413 fis, clone NT2NE2000259, moderately
           similar to OOCYTE ZINC FINGER PROTEIN XLCOF6.1. ).
          Length = 242

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 113 PNGNGYEPIDNGAYYVDPPQG-RPYFKPTPFPGARGG 220
           P G  Y   DNG   +DP Q  RP+ +P  +PG   G
Sbjct: 43  PEGLPYSSPDNGEAILDPSQAPRPFNEPCKYPGRTKG 79


>AY048121-1|AAK85703.1|  659|Homo sapiens RAS guanyl releasing
           protein 4 variant 2 protein.
          Length = 659

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKLI 248
           N+   +H +W LP ADL + L  S   A G  + LR+L+
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120


>AY048119-1|AAK85701.1|  673|Homo sapiens RAS guanyl releasing
           protein 4 protein.
          Length = 673

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKLI 248
           N+   +H +W LP ADL + L  S   A G  + LR+L+
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRLL 120


>BC150202-1|AAI50203.1|  659|Homo sapiens RASGRP4 protein protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 132 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKL 245
           N+   +H +W LP ADL + L  S   A G  + LR+L
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRL 119


>BC146669-1|AAI46670.1|  659|Homo sapiens RASGRP4 protein protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 132 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKL 245
           N+   +H +W LP ADL + L  S   A G  + LR+L
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRL 119


>AY048120-1|AAK85702.1|  170|Homo sapiens RAS guanyl releasing
           protein 4 variant 1 protein.
          Length = 170

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 132 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKL 245
           N+   +H +W LP ADL + L  S   A G  + LR+L
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRL 119


>AF448437-1|AAL87858.1|  673|Homo sapiens guanyl nucleotide
           releasing protein 4 protein.
          Length = 673

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +3

Query: 132 NLSTTVHITWTLPKADLTSSLPLSLVLAVGSKEYLRKL 245
           N+   +H +W LP ADL + L  S   A G  + LR+L
Sbjct: 83  NMVLAMH-SWVLPSADLAARLLTSYQKATGDTQELRRL 119


>AB018359-1|BAA84924.1| 1220|Homo sapiens ABP130 protein.
          Length = 1220

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYY--VDP-PQGRPYFKPTPFPGARGG 220
           NPN +G  P   G  +  V P PQ +PY    P+P   GG
Sbjct: 850 NPNASGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGG 889


>AB018358-1|BAA84923.1| 1181|Homo sapiens ABP125 protein.
          Length = 1181

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYY--VDP-PQGRPYFKPTPFPGARGG 220
           NPN +G  P   G  +  V P PQ +PY    P+P   GG
Sbjct: 811 NPNASGQLPTSPGHMHTQVPPYPQPQPYQPAQPYPFGTGG 850


>BC111545-1|AAI11546.1|  569|Homo sapiens mex-3 homolog B (C.
           elegans) protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           N NGNGY     G   V  P G P  +PT
Sbjct: 334 NNNGNGYTYTAGGEASVPSPDGCPELQPT 362


>BC036211-1|AAH36211.1|  569|Homo sapiens MEX3B protein protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           N NGNGY     G   V  P G P  +PT
Sbjct: 334 NNNGNGYTYTAGGEASVPSPDGCPELQPT 362


>AY950678-1|AAY34146.1|  569|Homo sapiens MEX3B protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           N NGNGY     G   V  P G P  +PT
Sbjct: 334 NNNGNGYTYTAGGEASVPSPDGCPELQPT 362


>AL136778-1|CAB66712.2|  266|Homo sapiens hypothetical protein
           protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           N NGNGY     G   V  P G P  +PT
Sbjct: 31  NNNGNGYTYTAGGEASVPSPDGCPELQPT 59


>AK131424-1|BAD18571.1|  569|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16544 fis, clone OCBBF3003761. ).
          Length = 569

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           N NGNGY     G   V  P G P  +PT
Sbjct: 334 NNNGNGYTYTAGGEASVPSPDGCPELQPT 362


>AB095929-1|BAC23105.1|  501|Homo sapiens KIAA2009 protein protein.
          Length = 501

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 NPNGNGYEPIDNGAYYVDPPQGRPYFKPT 196
           N NGNGY     G   V  P G P  +PT
Sbjct: 266 NNNGNGYTYTAGGEASVPSPDGCPELQPT 294


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,600,947
Number of Sequences: 237096
Number of extensions: 1212711
Number of successful extensions: 6308
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6305
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)