Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt3m04
(343 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039046-5|AAB94217.1| 68|Caenorhabditis elegans Caenacin (cae... 30 0.38
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 2.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 2.0
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr... 27 3.5
Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 27 4.7
Z99273-5|CAI91166.1| 224|Caenorhabditis elegans Hypothetical pr... 26 6.1
U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine rece... 26 6.1
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 26 6.1
Z77136-2|CAB00884.3| 670|Caenorhabditis elegans Hypothetical pr... 26 8.1
>AF039046-5|AAB94217.1| 68|Caenorhabditis elegans Caenacin
(caenorhabditis bacteriocin)protein 5 protein.
Length = 68
Score = 30.3 bits (65), Expect = 0.38
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 47 MKFFMIFVLALLAMANAQEDYNPNGNGYEPIDN-GAY 154
++F I +LA+LA+A+AQ YN G GY N G Y
Sbjct: 2 LRFTCILLLAMLALASAQWGYNSYG-GYNSYGNYGGY 37
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +2
Query: 89 ANAQEDYNPNGNGY--EPIDNGAYYVD--PPQGRPYFKPTPFP 205
A +Q Y P G G P G Y PP G+PY P +P
Sbjct: 665 AQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYP 707
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.9 bits (59), Expect = 2.0
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = +2
Query: 89 ANAQEDYNPNGNGY--EPIDNGAYYVD--PPQGRPYFKPTPFP 205
A +Q Y P G G P G Y PP G+PY P +P
Sbjct: 665 AQSQAHYGPPGGGQGPPPPPQGQQYYGGPPPPGQPYGPPGGYP 707
>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical protein
C27B7.4 protein.
Length = 1274
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 122 NGYEPIDNGAYYVDPPQGRPYFKPTPFPGA 211
NGY +NG +P Q P P+ FPGA
Sbjct: 1146 NGYPNNNNGGAIGNPQQMLPPRDPSAFPGA 1175
>Z75711-1|CAB00032.1| 196|Caenorhabditis elegans Hypothetical
protein K02B12.2 protein.
Length = 196
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 108 TTLMETATNLSTTVHITWTLPKAD 179
TT +++ T+LS + TW LPK D
Sbjct: 24 TTHVKSTTDLSKCGNCTWVLPKLD 47
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical protein
T05H10.1 protein.
Length = 1326
Score = 26.6 bits (56), Expect = 4.7
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +3
Query: 87 WPTLKKITTLMETATNLSTTVHITWTLPK 173
WP LK ++E N + + +T+ LP+
Sbjct: 1238 WPYLKSRLDMLENKVNFTKDLQVTYPLPR 1266
>Z99273-5|CAI91166.1| 224|Caenorhabditis elegans Hypothetical
protein Y45F10C.6 protein.
Length = 224
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 193 RLEVRSALGRVHVICTVVDRFVAVSIRVVIFLSVGHSQQSEDENHEEFH 47
++ + + GRV + T V+R ++ +F + QS +E E+FH
Sbjct: 38 KVSIVESRGRVELRLTSVNRHETPNLTQFVFAIIVPFIQSPNEEEEDFH 86
>U56963-6|AAB38123.3| 324|Caenorhabditis elegans Serpentine
receptor, class v protein31 protein.
Length = 324
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/44 (22%), Positives = 25/44 (56%)
Frame = +3
Query: 81 WLWPTLKKITTLMETATNLSTTVHITWTLPKADLTSSLPLSLVL 212
W++PTL + L +T ++ + + +PK L+ + ++L++
Sbjct: 140 WIFPTLISLIVLKDTDVYYNSMEELEYVVPKNILSRNTLMALIV 183
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 75 LCWLWPTLKKITTLMETATNLSTTVHITWT--LPKADLTSSLP 197
LC+LW L TT T T ++ ++ T T L T+++P
Sbjct: 179 LCYLWVPLTTTTTTTTTTTTTTSPMNTTTTTVLINGTTTTTVP 221
>Z77136-2|CAB00884.3| 670|Caenorhabditis elegans Hypothetical
protein ZC376.2 protein.
Length = 670
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 107 YNPNGNGYEPIDNGAYYVDPPQGRPYF-KPTP 199
Y+P GN + G YV+PP G F KP P
Sbjct: 36 YSPLGNQTGIVFFGVPYVEPPVGNLRFRKPRP 67
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,864,351
Number of Sequences: 27780
Number of extensions: 171925
Number of successful extensions: 408
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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