Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m04
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   5.4  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    20   7.2  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 148  CILRGPSPRPTLLQA 192
            C+LR  +P P +L+A
Sbjct: 1106 CVLRASTPAPVVLEA 1120


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 163 PSPRPTLLQAYPFPWCSRWEVKNILE 240
           P P+P L + YP    ++ ++  IL+
Sbjct: 31  PRPKPLLKKEYPLVMDTKLKIIEILQ 56


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 182 KVGLGEGPRNMH 147
           K GLG+GPR  +
Sbjct: 562 KTGLGKGPRTTY 573


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 104 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 205
           +YN   N Y+P+     Y++         P PFP
Sbjct: 323 NYNNYNNNYKPLHYNINYIEQIP-----VPVPFP 351


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,322
Number of Sequences: 438
Number of extensions: 2442
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)