Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3m03
         (713 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0634 + 4750795-4751109                                           31   0.91 
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548...    30   2.1  
02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052...    30   2.1  
07_03_0971 + 23038409-23039134,23040321-23040611                       29   4.8  
03_01_0564 - 4176177-4178096                                           29   4.8  
01_06_1737 - 39559321-39559461,39559761-39559817,39559919-395601...    28   6.4  
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014...    28   8.5  

>07_01_0634 + 4750795-4751109
          Length = 104

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 15/63 (23%), Positives = 30/63 (47%)
 Frame = -1

Query: 380 SPLRILELNCRHVGFSTYASYVPSHPLCGTGGLNRNLPTGASPYGIPLNAKKSFSFNKLF 201
           +P R + L C  V  + Y +++  + LC TG   R +  G    G+P + + ++      
Sbjct: 2   APRRRVRLICSAVSLALYTAFLAFYLLCATGRSFRGVVLGPGAGGVPPHVELAWKLANWV 61

Query: 200 SIL 192
           ++L
Sbjct: 62  AVL 64


>08_01_0632 -
           5479118-5479555,5479701-5479866,5480452-5480565,
           5480713-5480849
          Length = 284

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
 Frame = +1

Query: 364 RMRNGEEFGISGSEDCLFINIFTPSLKGSAPVVVFDYNDNFRTGFNGSLTYAP---DFFV 534
           R+   E +G    E   +I   +PSLKG + + +F Y D  +  F   ++  P   D  V
Sbjct: 63  RLEVFEGYGFVNDELLQYIGDRSPSLKGLSLISLFSYLDISKKVFTEFISKCPCLEDLVV 122

Query: 535 EEG 543
           EEG
Sbjct: 123 EEG 125


>02_03_0235 -
           16702768-16702956,16703956-16704492,16705084-16705233,
           16705310-16705625,16707005-16707286,16707895-16707971,
           16708121-16708186,16708700-16709246,16709435-16709565,
           16709642-16709746,16709859-16710039,16710123-16710185,
           16711000-16711109,16711576-16711638,16711859-16712191
          Length = 1049

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +1

Query: 214 KENDFLAFRGIPYGEAPVGKLRFKPPVPHKGWEGTYEAY 330
           KE D L  + I + + PVG    +  V  +GW+  +++Y
Sbjct: 305 KEPDRLQVKCITFSQPPVGNAALRDYVHRRGWQDYFKSY 343


>07_03_0971 + 23038409-23039134,23040321-23040611
          Length = 338

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +1

Query: 319 YEAYVEKPTCLQFSSRMRNGEEFGISGSED-CLFI 420
           Y  +V +  CLQ +  + NG ++ +SGSED C++I
Sbjct: 256 YSGHVNRKYCLQSAFSVTNG-KYIVSGSEDNCVYI 289


>03_01_0564 - 4176177-4178096
          Length = 639

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 350 RHVGFSTYASYVPSHPLCGTGG 285
           RH GF +   ++ +HP C +GG
Sbjct: 90  RHEGFGSQCEFLRAHPQCSSGG 111


>01_06_1737 -
           39559321-39559461,39559761-39559817,39559919-39560117,
           39560217-39560344,39560443-39560548,39560721-39560800,
           39561189-39561286,39561368-39561481,39561567-39561707,
           39561801-39561885,39562761-39563099
          Length = 495

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 241 GIPYGEAPVGKLRFKPPVPHKGWEGTYEAYVEKP 342
           G PYG+   G   +  P P  G+   Y AY + P
Sbjct: 41  GYPYGQDAHGGGYYGAPAPQGGYAAPYPAYQQPP 74


>03_02_0712 -
           10600147-10600196,10600257-10600378,10600993-10601489,
           10601663-10601851,10601936-10602099,10602193-10602446,
           10602535-10602691,10602830-10602995,10603121-10603227,
           10603305-10603478,10603594-10603689,10603781-10603862,
           10603948-10604058,10604253-10604309,10604638-10604709,
           10604799-10605041,10605195-10605341,10605381-10605616,
           10605745-10605865
          Length = 1014

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 299 CGTGGLNRNLPTGASPYGIPLNAKKSFSFNKLFSILPNRTQFPNFTST 156
           C  G ++    T  +P       +K+FSFNK+F   P+ TQ   F  T
Sbjct: 408 CAVGSIDEGNITIITPSKSGKEGRKTFSFNKVFG--PSATQDEVFLDT 453


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,366,695
Number of Sequences: 37544
Number of extensions: 351033
Number of successful extensions: 949
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)