Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt3l23
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ...    31   0.24 
U88184-4|AAK31518.1|   96|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z68001-2|CAA91973.2|  130|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
           protein Y102A11A.3 protein.
          Length = 1571

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
 Frame = -2

Query: 293 LKEINAKIIINTHEMNQHKIYIN-LENIYHVEYKN---ISINYN 174
           LK +N+K++INT  + ++ + IN +++ YH   +N    SIN N
Sbjct: 807 LKTVNSKVLINTEFLQENSLTINVIDSCYHENIQNHVLSSINNN 850


>U88184-4|AAK31518.1|   96|Caenorhabditis elegans Hypothetical
           protein F36H5.9 protein.
          Length = 96

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -2

Query: 302 LSYLKEINAKIIINTHEMNQHKIYINLENIYHV--EYKNISINYN 174
           LS L E N+K +I+  ++   KIYI ++N  HV  +  N S  +N
Sbjct: 29  LSLLSE-NSKKLISALKIFDRKIYIEVQNHVHVILDTHNCSFGFN 72


>Z68001-2|CAA91973.2|  130|Caenorhabditis elegans Hypothetical
           protein C11G10.1 protein.
          Length = 130

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 164 FSAGYSLYLYSYIQHGKY 217
           FSAG +L + SY+ HG Y
Sbjct: 26  FSAGLTLLIASYMYHGSY 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,593,899
Number of Sequences: 27780
Number of extensions: 78287
Number of successful extensions: 243
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)